CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCTGATTGACATACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATGAAAAATTCAGGTGAC
AGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCCTATTTATAATAGCCAGAAGCTGGAAAGAACCCA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGC
CAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCAC
AAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAA
ACCTAGTATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTC
AAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAAGTGG
GAACAAAACAT

NTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATATTTACAGAGTGGCTCTGTATC
AGAAAGGATAGAAAGAAGGACCAGCCCTTTCAGTGTGCCTCAGAAAGGTT
GTCAAAAAATGGCCCAGGATACACTAAGAAGATGCTCCTGCTGTGGGAAC
TAGTGCACTCACCTGGCCTCAGCTGCTTTACTCAAAGCCTAATGTCAGAA
ACGATATTCCCCCACTTATTCCCATAATTTTTTTTCCCATTTCCACTCTC
CCTGTTGGCTTAAAAATGTCCCCTTTTCTTTTAAGGCATAAGAATATGGA
GGAAATGTCATAATATTGTGCAGTCTCCGGAACCTCTCTTGCCTCTTAAA
GAGGCTCAGATAATGCCTCTTGGTGGGGCGGGGCACTGGGAAATCAGTAT
CTTCTCCCCTGCCCAAGACAGGTACTATACCTGCTCACCCTCGTGCCAAG
GCTTTGATACACACAGGCAACTGTGGGGCTTCATTGAGAAGCATGGAATC
TAAAACCGACTGGCCAGAAAGGAATGTAACCTATCTTTCACGAGCCTTTG
TTTTATGAGATGCTAAGACCTAGCACGAACGTGTATGAACTACATATGCA
AAGAAAACATATCACATGTGATACAGCCTTCTAGACTGTGGCCTTTCTAG
ATTTGTAACTAAAAACTGCTCTGAAATCCAGAAAACAAAAACAAAAACTA
ACCCACTGGACATTCTCTCTN

Query= MSMg01no531_h16.g1 MSMg01no531_h16.g1 CHROMAT_FILE:
MSMg01no531_h16.g1 PHD_FILE: MSMg01no531_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:07 2005
         (669 letters)



>mm_chr1_52389028_52390098
          Length = 1071

 Score = 1183 bits (612), Expect = 0.0
 Identities = 656/672 (97%), Gaps = 4/672 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatttacagagtggctctgtatcagaaaggatagaaagaaggaccagccctttcagtgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 atatttacagagtggctctgtatcagaaaggatagaaagaaggaccagtcctttcagtgt 260

                                                                       
Query: 61  gcctcagaaaggttgtcaaaaaatggcccaggatacactaagaagatgctcctgctgtgg 120
           | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 gtctcagaaaggttgtcaaaaaatggcccaggacacactaagaagatgctcctgctgtgg 320

                                                                       
Query: 121 gaactagtgcactcacctggcctcagctgctttactcaaagcctaatgtcagaaacgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaactagtgcactcacctggcctcagctgctttactcaaagcctaatgtcagaaacgata 380

                                                                       
Query: 181 ttcccccacttattcccataattttttttcccatttccact---ctccctgttggcttaa 237
           ||||||||||||||||||||| ||||| |||||||||||||   ||||||||||||||||
Sbjct: 381 ttcccccacttattcccataa-tttttatcccatttccactcggctccctgttggcttaa 439

                                                                       
Query: 238 aaatgtccccttttcttttaaggcataagaatatggaggaaatgtcataatattgtgcag 297
           ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 440 aaaggtccctttttcttttaaggcataagaatatggaggaaatgtcataatattgtgtag 499

                                                                       
Query: 298 tctccggaacctctcttgcctcttaaagaggctcagataatgcctcttggtggggcgggg 357
           ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 500 tctccagaacctctcttgcctcttaaagaggctcagatattgcctcttggtggggcgggg 559

                                                                       
Query: 358 cactgggaaatcagtatcttctcccctgcccaagacaggtactatacctgctcaccctcg 417
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cactgggaaatcagtgtcttctcccctgcccaagacaggtactatacctgctcaccctcg 619

                                                                       
Query: 418 tgccaaggctttgatacacacaggcaactgtggggcttcattgagaagcatggaatctaa 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgccaaggctttgatacacacaggcaactgtggggcttcattgagaagcatggaatctaa 679

                                                                       
Query: 478 aaccgactggccagaaaggaatgtaacctatctttcacgagcctttgttttatgagatgc 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaccgactggccagaaaggaatgtaacctatctttcacgagcctttgttttatgagatgc 739

                                                                       
Query: 538 taagacctagcacgaacgtgtatgaactacatatgcaaagaaaacatatcacatgtgata 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 taagacctagcacgaacgtgtatgaactacatatgcaaagaaaacatatcacatgtgata 799

                                                                       
Query: 598 cagccttctagactgtggcctttctagatttgtaactaaaaactgctctgaaatccagaa 657
           ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 800 cagccttctagactgtggcctttctagatatgtaactaaaaactggtctgaaatccagaa 859

                       
Query: 658 aacaaaaacaaa 669
           ||||||||||||
Sbjct: 860 aacaaaaacaaa 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1071
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1061
Effective search space:   699199
Effective search space used:   699199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)