Query= MSMg01no531_j08.b1 MSMg01no531_j08.b1 CHROMAT_FILE:
MSMg01no531_j08.b1 PHD_FILE: MSMg01no531_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:15 2005
(694 letters)
>mm_chr1_41485624_41486718
Length = 1095
Score = 1295 bits (670), Expect = 0.0
Identities = 685/692 (98%), Gaps = 5/692 (0%)
Strand = Plus / Minus
Query: 5 gaattctttgac---ttaataagtctatcataaacattttatgggctgttaatttggaga 61
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gaattctttgacaga--aataagtctatcataaacattttatgggctgttaatttggaga 647
Query: 62 agttcacataatgacgtggccagttctaggggatgacggattctgtgcttcagttcgatc 121
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 646 agttcacataatgacgtggccagttctaggggttgacggattctgtgcttcagttcgatc 587
Query: 122 cggtactgatacgctgagaaatgtaaagcccttcccatagtccttcccggaacttcctac 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tggtactgatacgctgagaaatgtaaagcccttcccatagtccttcccggaacttcctac 527
Query: 182 ctacctattcacgtggatttttgcagcagatagattaatttctgagcaacaagtggcgct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ctacctattcacgtggatttttgcagcagatagattaatttctgagcaacaagtggcgct 467
Query: 242 ttcaatttgtaagtccttctaacgtaggttttctgggcttgtatgaaacagagtcataaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttcaatttgtaagtccttctaacgtaggttttctgggcttgtatgaaacagagtcataaa 407
Query: 302 ctgtcctcgtatcgattatgtggccaaagctcggaaagccaggcgcatggcggttttcat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ctgtcctcgtatcgattatgtggccaaagctcggaaagccaggcgcatggcggttttcat 347
Query: 362 tcggaaacatttcacttgatgtgaagagtctaacagcctctcctacactgcgtttcagtg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tcggaaacatttcacttgatgtgaagagtctaacagcctctcctacactgcgtttcagtg 287
Query: 422 tatttgttttcttaatgaagagtcctgtcattcatccatgaaatacacaccttgaatctg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tatttgttttcttaatgaagagtcctgtcattcatccatgaaatacacaccttgaatctg 227
Query: 482 acattagtttgtaagatagttgtttttaaaatgtatatatatttaataaaatatctactt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 acattagtttgtaagatagttgtttttaaaatgtatatatatttaataaaatatctactt 167
Query: 542 ttatctaatctttctttcctcagccttgaattatacttttagtaggacctaaaattaaaa 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ttatctaatctttctttcctcagccttgaattatacttttagtaggacctaaaattaaaa 107
Query: 602 caatatcattgtaatttatgaaagttttaatataggacattagtctgataacaattaatt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 caatatcattgtaatttatgaaagttttaatataggacattagtctgataacaattaatt 47
Query: 662 acactggttacctcaaatttgatataaatata 693
||||||||||||||||||||||||||||||||
Sbjct: 46 acactggttacctcaaatttgatataaatata 15
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1095
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1085
Effective search space: 742140
Effective search space used: 742140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_j08.g1 MSMg01no531_j08.g1 CHROMAT_FILE:
MSMg01no531_j08.g1 PHD_FILE: MSMg01no531_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:15 2005
(660 letters)
>mm_chr1_41324561_41325620
Length = 1060
Score = 1164 bits (602), Expect = 0.0
Identities = 652/682 (95%), Gaps = 22/682 (3%)
Strand = Plus / Plus
Query: 1 aggagtagctggtgaggccagcatgagccctgtattaataattcactggtgcaaaaaa-t 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 179 aggagtagctggtgaggccagcatgagccctgtattaataattcactggtgcaaaaaaat 238
Query: 60 atgatggtaagatccttgaatatttgaaagcccacgtgcatttttggtccacacaacaaa 119
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 239 atgatggtaagatccttgaatatttgaaagcccatgtgcatttttggtccatacaacaaa 298
Query: 120 ataaaaacaaactctgattcgatgtcatcattagcagacttttaattgatcataggagaa 179
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 299 ataaaaacaaactctgattcgatgttatcattagcagacttttaattgatcataggagaa 358
Query: 180 atttcattatttccttattaacattctcatggcatgccagagttcttgagttttgcctat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atttcattatttccttattaacattctcatggcatgccagagttcttgagttttgcctat 418
Query: 240 ttattattattattattattatta---------------------atcaccttacagggg 278
|||||||||||||||||||||||| |||||||||||||||
Sbjct: 419 ttattattattattattattattattattattattattattattaatcaccttacagggg 478
Query: 279 aaatacatgatttgatattttgccaaggatttgttttaggggttgactgagaaataacac 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aaatacatgatttgatattttgccaaggatttgttttaggggttgactgagaaataacac 538
Query: 339 agttatgacttcaaggctcctgagcccctctcctaaccctgtctggtagcagcctctctt 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agttatgacttcaaggctcctgagcccctctcctaaccctgtctggtagcagcctctctt 598
Query: 399 tctacctagagatacaaatgtaaggaaatcggaagcatgaaatattggaggtcaaagatg 458
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 599 tctacctagggatacaaatgtaaggaaatcagaagcatgaaatattggaggtcaaagatg 658
Query: 459 aaaacacaatttacaaataccaaacttcaaccccgccttcattaaaagacctggcaccca 518
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aaaacacaatttacaaatactaaacttcaaccccgccttcattaaaagacctggcaccca 718
Query: 519 tgacaaaatgtgttggttatctttatacttgtataaatgctttctcactcattagatttt 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tgacaaaatgtgttggttatctttatacttgtataaatgctttctcactcattagatttt 778
Query: 579 gaaacacatttttattgttttgtttttgtgtgttcgctttgtttgcttgcttgtttgttt 638
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 779 gaaatacatttttattgttttgtttttgtgtgtttgctttgtttgcttgcttgtttgttt 838
Query: 639 tttaacttaactgtggctagga 660
||||||||||||||||||||||
Sbjct: 839 tttaacttaactgtggctagga 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
