GGGCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGCCTGTTCTTTGAGAGCACCATCATCTCAATATTCCTC
CAAAGAGTCCAGTCTCAATGTGATGGCACCCTGGCTACCTTATAAAGCAA
TGATTTTTCTTTCCGGTAGTTCTAATAGAAGCAAAGTTTCTCTGTCTCCA
AAACCCCAGAGTAATACGTACCATCCCCCATCACTTAAACTGGAGAGCAA
GAGAAAAAAATCAAAGCCAAACACTGCAGACTAGCACTTCTGAATGGTTC
CATTCTTGTTACTGTCTGTTCTGAACAATTACAGCCTCTGCTTTTTGTTC
CTGGCTACTGCACCAGTGGTGTGGAGGGAGAATAAGCCCCTGTGTCTGTC
GGAGGATGCTAAAAAAGTGAAGAAAAGGCAAAGCACTCACAGTGTCCGTG
AAGCGTTAGGACAGGCTCTGCTGCTGTTTCTTTCTCTGTCTTGCCTCTGG
CTGCGCTCCTACAATTGCTGGACTTCCTGAAGTCTCCGCTCACAGTCAGT
CAGCTTGACAGAAAGGATTAGGCTCCAGCCAGAACATTGTACAGCAGCAC
AATCCAATGCTGGCAGTCCCTGCAGCTGTCATTTGTGTGAGTGAAATTGA
AACTGGTGGGAGGTGCGTGAGGGACAGCCACGGGGACCTGACACCTTTTG
TTAGGCCAGAGGCCTGATGCTGCCCACCACTGTGCCCAAATCAAGGT

TTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAAAGACTTACTGACAA
CAGATATCTGTTAATACTTAACAAAGAAGCAATTTCTGTACTTTACTTTA
GGAGGTTGAAGAGCACTTCAGATGTACTCCAAACGTCATCTGGATTTTCA
GTTTCCATTCATGCTATGGCCTTTTCAAGACCTTAAGATTAAGGATTAGA
GGAAGCTAGATGGGAAAGAATTGAATATAGAAAAGGAATAGGTGGCAAGA
ACTGACATCAATTCCTGGCCCTACCTGTTCTTAGGCACTTATGTGCACAT
GAACATGCCAACTTCATGTTTCTTTTTCATTAGCTTTTTCAGGCACTTCC
TAGCCGGTGAATGCTTCATGTGACGCCTGGGTTTCTGATCTATGACTTGA
CCTTGACTATGAGCCTTTCTCAGATTGTTTAATCCAAGTTCTCTGCATCA
TGTCAGTGTTACTCCTTCACTGCCTTTGTAGTTTTTATTTTTTGGATAAG
TTAACCCAGTATCATTTACATTCCCATACACACATCTAATACACATCTTT
TTGATCAAACTGTGAAGGTATTGAAGTGGTCAGTCTATTACCACAGTGGA
AATACAGTCTTCAGAAGAGCAAGAAGCAACGTGCACAACAGAGGCTGACT
TCTACAGGGAAAGGCTTTCAAAGGGTCTCCTCATATTCTGAAGAATATN

Query= MSMg01no532_l01.b1 MSMg01no532_l01.b1 CHROMAT_FILE:
MSMg01no532_l01.b1 PHD_FILE: MSMg01no532_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:40 2005
         (654 letters)



>mm_chr1_160483779_160484832
          Length = 1054

 Score = 1180 bits (610), Expect = 0.0
 Identities = 640/650 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagcctgttctttgagagcaccatcatctcaatattcctccaaagagtccagtc 64
           |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattccagcctgtcctttgagagcaccatcatctaaatattcctccaaagagtccagtc 264

                                                                       
Query: 65  tcaatgtgatggcaccctggctaccttataaagcaatgatttttctttccggtagttcta 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 tcaatgtgatggcaccctggctaccttataaagccatgatttttctttccggtagttcta 324

                                                                       
Query: 125 atagaagcaaagtttctctgtctccaaaaccccagagtaatacgtaccatcccccatcac 184
           ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 325 atagaagcaaagtttctctgtctctgtaaccccagagtaatacgtaccatcccccatcac 384

                                                                       
Query: 185 ttaaactggagagcaagagaaaaaaatcaaagccaaacactgcagactagcacttctgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaaactggagagcaagagaaaaaaatcaaagccaaacactgcagactagcacttctgaa 444

                                                                       
Query: 245 tggttccattcttgttactgtctgttctgaacaattacagcctctgctttttgttcctgg 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 445 tgcttccattcttgttactgtctgttctgaacaattacagcctctgctttttgttgctgg 504

                                                                       
Query: 305 ctactgcaccagtggtgtggagggagaataagcccctgtgtctgtcggaggatgctaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctactgcaccagtggtgtggagggagaataagcccctgtgtctgtcggaggatgctaaaa 564

                                                                       
Query: 365 aagtgaagaaaaggcaaagcactcacagtgtccgtgaagcgttaggacaggctctgctgc 424
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 565 aagtgaagaaaaggcaaagcactcacagtgtccgtgaagcattaggacaggctctgctgc 624

                                                                       
Query: 425 tgtttctttctctgtcttgcctctggctgcgctcctacaattgctggacttcctgaagtc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtttctttctctgtcttgcctctggctgcgctcctacaattgctggacttcctgaagtc 684

                                                                       
Query: 485 tccgctcacagtcagtcagcttgacagaaaggattaggctccagccagaacattgtacag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccgctcacagtcagtcagcttgacagaaaggattaggctccagccagaacattgtacag 744

                                                                       
Query: 545 cagcacaatccaatgctggcagtccctgcagctgtcatttgtgtgagtgaaattgaaact 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 745 cagcacaatccaatgctggcagtccctgcagctgtcatttgtgtgagtgaaattgagact 804

                                                             
Query: 605 ggtgggaggtgcgtgagggacagccacggggacctgacaccttttgttag 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggtgggaggtgcgtgagggacagccacggggacctgacaccttttgttag 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no532_l01.g1 MSMg01no532_l01.g1 CHROMAT_FILE:
MSMg01no532_l01.g1 PHD_FILE: MSMg01no532_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:40 2005
         (623 letters)



>mm_chr1_160629709_160630731
          Length = 1023

 Score = 1174 bits (607), Expect = 0.0
 Identities = 619/623 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataaagacttactgacaacagatatctgttaatacttaacaaagaagcaatttctgtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 aataaagacttactgacaacagatatctgttaatacttaacaaagaagcaatttctgtac 764

                                                                       
Query: 61  tttactttaggaggttgaagagcacttcagatgtactccaaacgtcatctggattttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tttactttaggaggttgaagagcacttcagatgtactccaaacgtcatctggattttcag 704

                                                                       
Query: 121 tttccattcatgctatggccttttcaagaccttaagattaaggattagaggaagctagat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 703 tttccattcatgctatggccttttcaagaccttaagattaaggattagaggaagctaggt 644

                                                                       
Query: 181 gggaaagaattgaatatagaaaaggaataggtggcaagaactgacatcaattcctggccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gggaaagaattgaatatagaaaaggaataggtggcaagaactgacatcaattcctggccc 584

                                                                       
Query: 241 tacctgttcttaggcacttatgtgcacatgaacatgccaacttcatgtttctttttcatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tacctgttcttaggcacttatgtgcacatgaacatgccaacttcatgtttctttttcatt 524

                                                                       
Query: 301 agctttttcaggcacttcctagccggtgaatgcttcatgtgacgcctgggtttctgatct 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 523 agctttttcaggcacttcctagccggtgaatgcttcatgtgacccctgggtttctgatct 464

                                                                       
Query: 361 atgacttgaccttgactatgagcctttctcagattgtttaatccaagttctctgcatcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 atgacttgaccttgactatgagcctttctcagattgtttaatccaagttctctgcatcat 404

                                                                       
Query: 421 gtcagtgttactccttcactgcctttgtagtttttattttttggataagttaacccagta 480
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 403 gtcagtgttactccttcactgcctttgtagcttttattttttggataagttaacccagta 344

                                                                       
Query: 481 tcatttacattcccatacacacatctaatacacatctttttgatcaaactgtgaaggtat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tcatttacattcccatacacacatctaatacacatctttttgatcaaactgtgaaggtat 284

                                                                       
Query: 541 tgaagtggtcagtctattaccacagtggaaatacagtcttcagaagagcaagaagcaacg 600
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tgaagtggtcggtctattaccacagtggaaatacagtcttcagaagagcaagaagcaacg 224

                                  
Query: 601 tgcacaacagaggctgacttcta 623
           |||||||||||||||||||||||
Sbjct: 223 tgcacaacagaggctgacttcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)