BAC Information

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BAC

Clone NameMSMg01-533A11
Chromosome1 (Build37)
Map Location 88,687,348 - 88,687,736
singlet/doubletsinglet
Overlap gene4930429A22Rik
Upstream geneCab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc
Downstream geneEG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533A11.T7 (MSMg01no533_a11.b1)MSMg01-533A11.TJ (MSMg01no533_a11.g1)
ACCAG601047AG601048
length735782
length of high quality
(start - end)
394 (58 - 451)66 (73 - 138)
definitionCHROMAT_FILE: MSMg01no533_a11.b1 PHD_FILE: MSMg01no533_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:08 2005CHROMAT_FILE: MSMg01no533_a11.g1 PHD_FILE: MSMg01no533_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCTGTTTTTTTTCCTGTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCACCATATGCTCTCTTCTTTCTAGTCACAAAATG
TTACATCAAAAGAAATGAACCAGATGTTTTTCTAATGTGGTCAAATACTG
AGATTGTTCAACAAATCTTTATTCCCTGCCTACTGTATGCCAGGCATTAG
GTGGCTGGCTTCAAGAGAAGTAAAGGAACAAATGATACTCACCCTTTCAG
AAGCATCCAAGGACTTCCCAAGGACTATCCTAGATGATTCTAACTCATTA
ATTTCCACCAACAAACACCCCATTTACAGGTGAATGCTTTCTTCACTTCA
AAGCTCAGAGCCAGGAAGTAGAAATCTAGAATGTAATCTCAGTGGACTTG
ACAAGACTGACATCTAACAGAACACTATTACTATTGCTTCTTTAAACACA
TAGTCCTTTGCCTGAAACGTTTTCTTCTCTCCTAAATGTTCATCAGGTAA
ACTCTCAATCCGCATGCCAAATATCACCCATTATTTAAAGTTTTTATTTA
TTTTATATACGTGAGTATACTGTTATTTGTCTTCATACTTACTCAATTAT
GGCATTACAACTTCATTTTAGATGTTTGTGAACCCATTATGTTGATTTGC
CGGAAATTGAACTCCAACATTTTCTGGTTTTATTAACCATCGTTTTTTTA
ACCATCTGAAATTTATCTTTCACCAGGTCCCTGGG
TCATGATTTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCGTTCCAGGGGAGAATTTGTTATTTG
TTTTTCTAGGTTTTGTACTTATAGTCTGGGAGTGTAGCTCAGCTGCTAGA
GTGTTTGCTCAGAGTCACCAATTCCTTGGTTTGATCCCTAGCATCATATA
AATTGGGTGTGGCAGTTCACATCGGAACCTATAGCACTAGGAAGATGGGG
GCAAGATCAGAAGTTCAAGGTCACCTTTGGCCAAATATGGTGTTTGAGGT
CAGCCTGGGATGAGATATGTTCTAAAGAATTAAATTGCCCTTGGGGCTGA
CAAGATAGCTTAGTGGTTAAGAGCACTGGATGCTCTTCCAGAGGACCTGT
GTTGTTTTTCCATGCGCTTACATGGTGGGTCATTACCATCTGAATACCTT
GCACCACGGGTATCTAACGTCCCTCCTTTGTTCACTGTAGGTCCCACGAA
ACATCTCGTGTGTATTCATACTTTTACCTGCCACCTCTTTTCTCTCTCCC
CATCTATATTGATTCAACCTTCTTCCTAATTTTTCCCTATCCCTCCCCCT
TATTTTTCCTTTTGTTTCGGTTTCCTTCCCGGTTTTTTTTGCTCATTTTT
TTTGCCCCTTTTTGTCCTCTTTTCTCCTCTCTTTTTTATTTTATCCTCAA
CCCCTTTTTTTTTTGCCACCTCTCTTTTTTTTCTCCCCTTTTTTCCCTTT
TTCTCGCCCTTCCATTTTTTCTATTTCGCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_a11.b1 MSMg01no533_a11.b1 CHROMAT_FILE:
MSMg01no533_a11.b1 PHD_FILE: MSMg01no533_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:08 2005
         (394 letters)



>mm_chr1_88687007_88687800
          Length = 794

 Score =  716 bits (370), Expect = 0.0
 Identities = 385/390 (98%), Gaps = 1/390 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccatatgctctcttctttctagtcacaaaatgttacatcaaaagaaatgaacc 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gaattcaccatatgctct-ttctttctagtcacaaaatgttacatcaaaagaaatgaacc 672

                                                                       
Query: 65  agatgtttttctaatgtggtcaaatactgagattgttcaacaaatctttattccctgcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 agatgtttttctaatgtggtcaaatactgagattgttcaacaaatctttattccctgcct 612

                                                                       
Query: 125 actgtatgccaggcattaggtggctggcttcaagagaagtaaaggaacaaatgatactca 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 611 actgtatgccaggcattaggtggctggcttcaagagaagtaaaggaacaaatgagactca 552

                                                                       
Query: 185 ccctttcagaagcatccaaggacttcccaaggactatcctagatgattctaactcattaa 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ccctttcagaagcatcaaaggacttcccaaggactatcctagatgattctaactcattaa 492

                                                                       
Query: 245 tttccaccaacaaacaccccatttacaggtgaatgctttcttcacttcaaagctcagagc 304
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 491 tttccaccaacaaacaccccatttacaggtgaatgctttcttcaattcaaagctcagagc 432

                                                                       
Query: 305 caggaagtagaaatctagaatgtaatctcagtggacttgacaagactgacatctaacaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 431 caggaagtagaaatctagaatgtaatctcagtggacttgacaagactgagatctaacaga 372

                                         
Query: 365 acactattactattgcttctttaaacacat 394
           ||||||||||||||||||||||||||||||
Sbjct: 371 acactattactattgcttctttaaacacat 342


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)