GACTTTTTTCTTCGTCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCTCACTGAGGCATTTAGCCCCTTAATATGAATTTT
CTGATCGGCTGTCACCCTCACGGGTGCGCCGAGCGTCACTGCCTCCGAAG
CACTTGTCATTCTTTAATGGAAACAAAACAGTCATTGCAGCCAGAGCCAC
GGTGTCATCTCACAGCCCCTTGCTGCGTCGGCAATAGTGGAATGACAGAG
AGGCCCTCGGTAGGGGTAATTAAAATGTAAATATTGATATTTTATTATTT
GAAATTACTTTCCAGCGTGGCATTTAATATCTCTCCATCTGTGCGGCTCT
GTTTAGCGGTCACTTTACTGCAGCTCTGGGAGTCAGAGCGTAGGCTTGAT
CCCCGTTATGTCAAAATGCTTGTTGCTGCTTAATTTTGATATCTAATTAA
GTGGAAAAGTACAGTCCGCACTGTAATCCATGGTATCTTAACCAGCTGCT
TGGGTATATTTAGAATTAATCTCCACTATGGAATCATCCTAATGTATGCA
ATTAAGGCTCTGCCGATGGTTAATTAGGTGTATTAGAATCAGGCAGTGTT
CTTTTTCTCCCCCTCCCCCCCCTCTCTTTCCCCTGCTTTTCTTTTGGACC
ATTGCCTATGCTAGTATTGCCTGCCTTCATAGGTGTTCTCAACACCCCTT
ATACCTAGTTTGCAGATGAACCTCTG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAAGCACTGAGCTGTTGTA
AAAGTCGTTGTACCCAGGACGATGCTTCTGTCCAGATGTCAGGAGGTCAA
AGGTGACATTACCATGGGAAAACGGGATAAAACTATCAAGGAGAGAAATT
TTATATTTTAAAAAATCTATTCATAGTTTTGATCAAATAGAAATCAAAAG
CTTGGTTTACTTGTATACAGTGTCAGTAAAGTAAACTCTCAAGTTTTTCC
GTCGGGGGAAACACATTCAATTTATTTCACATATCAGTAAAGTGGGATCA
TCACAGAAAGGCAGACTAGGAGGTTCCTGGGAAAGTAAATTCAGATGCCT
GGCTGAATAAGATGGATATCATTACACAACATCAGTGGGTTGTAAAAGGG
ATACTCCCAACCCTTACAGGAACTGCAAGCAGTTTAAAACCCAACTCTAA
GAGATAGGAGTCACTCAACTTCCCTAAAGCCTAATGATAGAGAGAAATTT
CTTCTAGCGTAGGTAGCTGGCTGGCCCACAGACTAGTACTAAGGCACTGG
TTCATTAAAATAACTGTTTTTGAGATGTTCATACTCAGGAAGCTGGAGAC
AGTTGACAGAATCGGGATTTTCCAAATCTTCATTGTCCTTCATTCCCCAA
ACACTGCAATTTCTGGCAAAATACTGCCAGTCCTCCCAGGGA

Query= MSMg01no533_c06.b1 MSMg01no533_c06.b1 CHROMAT_FILE:
MSMg01no533_c06.b1 PHD_FILE: MSMg01no533_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:16 2005
         (502 letters)



>mm_chr1_190010194_190011095
          Length = 902

 Score =  932 bits (482), Expect = 0.0
 Identities = 494/498 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctcactgaggcatttagccccttaatatgaattttctgatcggctgtcaccct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcactgaggcatttagccccttaatatgaattttctgatcggctgtcaccct 264

                                                                       
Query: 65  cacgggtgcgccgagcgtcactgcctccgaagcacttgtcattctttaatggaaacaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacgggtgcgccgagcgtcactgcctccgaagcacttgtcattctttaatggaaacaaaa 324

                                                                       
Query: 125 cagtcattgcagccagagccacggtgtcatctcacagccccttgctgcgtcggcaatagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagtcattgcagccagagccacggtgtcatctcacagccccttgctgcgtcggcaatagt 384

                                                                       
Query: 185 ggaatgacagagaggccctcggtaggggtaattaaaatgtaaatattgatattttattat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaatgacagagaggccctcggtaggggtaattaaaatgtaaatattgatattttattat 444

                                                                       
Query: 245 ttgaaattactttccagcgtggcatttaatatctctccatctgtgcggctctgtttagcg 304
           ||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 445 ttgaaattactttccagtgcggcatttaatatctctccatctgtgcgactctgtttagcg 504

                                                                       
Query: 305 gtcactttactgcagctctgggagtcagagcgtaggcttgatccccgttatgtcaaaatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtcactttactgcagctctgggagtcagagcgtaggcttgatccccgttatgtcaaaatg 564

                                                                       
Query: 365 cttgttgctgcttaattttgatatctaattaagtggaaaagtacagtccgcactgtaatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttgttgctgcttaattttgatatctaattaagtggaaaagtacagtccgcactgtaatc 624

                                                                       
Query: 425 catggtatcttaaccagctgcttgggtatatttagaattaatctccactatggaatcatc 484
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catggcatcttaaccagctgcttgggtatatttagaattaatctccactatggaatcatc 684

                             
Query: 485 ctaatgtatgcaattaag 502
           ||||||||||||||||||
Sbjct: 685 ctaatgtatgcaattaag 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no533_c06.g1 MSMg01no533_c06.g1 CHROMAT_FILE:
MSMg01no533_c06.g1 PHD_FILE: MSMg01no533_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:16 2005
         (653 letters)



>mm_chr1_190181485_190182537
          Length = 1053

 Score = 1224 bits (633), Expect = 0.0
 Identities = 648/653 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaagcactgagctgttgtaaaagtcgttgtacccaggacgatgcttctgtccagatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 ttgaagcactgagctgttgtaaaagtcgttgtacccaggacgatgcttctgtccagatgt 931

                                                                       
Query: 61  caggaggtcaaaggtgacattaccatgggaaaacgggataaaactatcaaggagagaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 caggaggtcaaaggtgacattaccatgggaaaacgggataaaactatcaaggagagaaat 871

                                                                       
Query: 121 tttatattttaaaaaatctattcatagttttgatcaaatagaaatcaaaagcttggttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 tttatattttaaaaaatctattcatagttttgatcaaatagaaatcaaaagcttggttta 811

                                                                       
Query: 181 cttgtatacagtgtcagtaaagtaaactctcaagtttttccgtcgggggaaacacattca 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 810 cttgtatacagtgtcagtaaagtaaactctcaagtttttcagtcgggggaaacacattca 751

                                                                       
Query: 241 atttatttcacatatcagtaaagtgggatcatcacagaaaggcagactaggaggttcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 atttatttcacatatcagtaaagtgggatcatcacagaaaggcagactaggaggttcctg 691

                                                                       
Query: 301 ggaaagtaaattcagatgcctggctgaataagatggatatcattacacaacatcagtggg 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ggaaaataaattcagatgcctggctgaataagatggatatcattacacaacatcagtggg 631

                                                                       
Query: 361 ttgtaaaagggatactcccaacccttacaggaactgcaagcagtttaaaacccaactcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttgtaaaagggatactcccaacccttacaggaactgcaagcagtttaaaacccaactcta 571

                                                                       
Query: 421 agagataggagtcactcaacttccctaaagcctaatgatagagagaaatttcttctagcg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 570 agagataggagtcactcaacttccctaaagcctaatgatagagagaaatttcttctagca 511

                                                                       
Query: 481 taggtagctggctggcccacagactagtactaaggcactggttcattaaaataactgttt 540
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 510 taggtagctggctggcccacagacgagtactaaggcactggttcattaaaataactgttt 451

                                                                       
Query: 541 ttgagatgttcatactcaggaagctggagacagttgacagaatcgggattttccaaatct 600
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 450 ttgagatgttcatactcaggaagctggagacagttgacagaattgggattttccaaatct 391

                                                                
Query: 601 tcattgtccttcattccccaaacactgcaatttctggcaaaatactgccagtc 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcattgtccttcattccccaaacactgcaatttctggcaaaatactgccagtc 338


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)