Query= MSMg01no533_c23.b1 MSMg01no533_c23.b1 CHROMAT_FILE:
MSMg01no533_c23.b1 PHD_FILE: MSMg01no533_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:19 2005
(578 letters)
>mm_chr1_78647156_78648134
Length = 979
Score = 791 bits (409), Expect = 0.0
Identities = 428/437 (97%), Gaps = 7/437 (1%)
Strand = Plus / Minus
Query: 14 gaattcagctatggatactgaaca---gatatgcatgtccttggagaagtaccacatgtt 70
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 433 gaattcagctatggatactgaacagatgatatgcatgtccttggagaagtaccacatgtt 374
Query: 71 gatcctaaaatggataggtcacatttcaacacgttttatattaaactgttttattccggg 130
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gatgctaaaatggataggtcacatttcaacacgttttatattaaactgttttattccggg 314
Query: 131 ttcaatgggaagacagttccttgtgtggcccagcttcaggtttcagttgtttcttctgtg 190
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 313 ttcaatgggaagacagttccttgtgtggcccagcttcaggtttcagttatttcttctgtg 254
Query: 191 atgtttatcttttttttttttgtccacaataaatgcattctcttatttttttttcatttt 250
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 253 atgtttatc--ttttttttttgtccacaataaatgcattctcttatttttttttca--tt 198
Query: 251 ttttttttttacaaacatggaccatagcccacatttaagtggttacttttttaagtcctt 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ttttttttttacaaacatggaccatagcccacatttaagtggttacttttttaagtcctt 138
Query: 311 gagctcgtagtgctgagagcgtgatgtaaaactatatcatcctcacctgggagctcacaa 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 gagctcgtagtgctgagagcgtgatgtaaaactatatcatcctcacctgggagctcacaa 78
Query: 371 gaaatgcagaatcgcaggccctccaggcctactccagtgagatccacaaaacgttcatgt 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 gaaatgcagaatcgcaggccctccaggcctactccagtgagatccacaaaacgttcatgt 18
Query: 431 gatcaatacgtagccgc 447
|||||||||||||||||
Sbjct: 17 gatcaatacgtagccgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 979
Length adjustment: 10
Effective length of query: 568
Effective length of database: 969
Effective search space: 550392
Effective search space used: 550392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_c23.g1 MSMg01no533_c23.g1 CHROMAT_FILE:
MSMg01no533_c23.g1 PHD_FILE: MSMg01no533_c23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:19 2005
(592 letters)
>mm_chr1_78476898_78477889
Length = 992
Score = 1122 bits (580), Expect = 0.0
Identities = 589/592 (99%)
Strand = Plus / Plus
Query: 1 agcagccctggcaaggagtcccatggaacacgaggacaagagggacagcactggcaaatc 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagccctggcaaggagtcccgtggaacacgaggacaagagggacagcactggcaaatc 260
Query: 61 tgaacgccctgagaggagagctgggctgaaagtgagggacagcagatcggtgggaagccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaacgccctgagaggagagctgggctgaaagtgagggacagcagatcggtgggaagccg 320
Query: 121 tagggagacagcaaactgaaggagccaccacaccagcggccctaatgcagcagcagagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagggagacagcaaactgaaggagccaccacaccagcggccctaatgcagcagcagagct 380
Query: 181 tagaaacctctgctacgcctaaggtaatacattacagcagagaataacacatttttcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaaacctctgctacgcctaaggtaatacattacagcagagaataacacatttttcaaa 440
Query: 241 aaagataatcatggccaaaaagttaaaattctactcctatttttttatgtttgttattta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagataatcatggccaaaaagttaaaattctactcctatttttttatgtttgttattta 500
Query: 301 aaacagcagggtactataaatacacttaagaaattttcagtcacaaggactaaaagttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaacagcagggtactataaatacacttaagaaattttcagtcacaaggactaaaagttat 560
Query: 361 tatattccacacctgaccttagccaaaggttcaacagtgctaaaagttaaatgtcaagcg 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 tatattccacacctgaccttagccaaaggttcagcagtgctaaaagttaaatgtcaagcg 620
Query: 421 ttactgttaccctttatgtagaaacgctactcagtggcaacccatcaatgacctgctgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttactgttaccctttatgtagaaacgctactcagtggcaacccatcaatgacctgctgaa 680
Query: 481 gtaacagagggagctctgtaacagcgtaccatgctttctgccctccatgaccaaccttcc 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 gtaacagagggagctctgtaacagcataccatgctttctgccctccatgaccaaccttcc 740
Query: 541 tgtccacataaggattacaagctgctgtctgggggaaggaaacggtcagcaa 592
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtccacataaggattacaagctgctgtctgggggaaggaaacggtcagcaa 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
