Query= MSMg01no533_j22.b1 MSMg01no533_j22.b1 CHROMAT_FILE:
MSMg01no533_j22.b1 PHD_FILE: MSMg01no533_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:52 2005
(586 letters)
>mm_chr1_29089471_29090456
Length = 986
Score = 953 bits (493), Expect = 0.0
Identities = 565/599 (94%), Gaps = 20/599 (3%)
Strand = Plus / Plus
Query: 5 gaattctcac--atatatataacccaacattgattttcccttacagatatgagtgggtta 62
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattctcacatatatatataacccaacattgattttcccttacagatatgagtgggtta 260
Query: 63 tgattttatattttcctaaatatatcaagaacataagtacaagtcaccatctcttgcaaa 122
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 261 tgattttatattttcctaaatatatcaagaacacaagtacaagtcaccatctcctgcaaa 320
Query: 123 tgaagactgaatgaatcaacttagaggatatattttcagcatcttagcctcataatgctt 182
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagactgaatgaatcaacttataggatatattttcagcatcttagcctcataatgctt 380
Query: 183 tgtaaaatctccatcatttattacccaagtgcttcactttggctttatttcttttataag 242
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaaaatctccatcatgtattacccaagtgcttcactttggctttatttcttttataag 440
Query: 243 agacacatattctggccaggcggtggtggcgcatgcctttaattccagcacttgggaggg 302
||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 441 agacacatactctggccaggcagtggtggcacatgcctttaattccagcacttgggaggc 500
Query: 303 aga--caggtggatttctgagttccaggctaacctggtctacaaactgagttccaggaca 360
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaggcaggtggatttctgagttccaggctaacctggtctacaaactgagttccaggaca 560
Query: 361 tccagggctacacagagaaaccctgtcttgaaaaacaaaaacaaacaaacaaaca--aaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 tccagggctacacagagaaaccctgtcttgaaaaacaaaaacaaacaaacaaacagaaaa 620
Query: 419 accccacaaaaacaaaagaaacacatattctaatataggtcatgtattttcttcactgtc 478
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acc--acaaaaccaaaagaaacacatattctaatataggtcatgtattttcttcactgtc 678
Query: 479 ctttcacattaatttaatttaaatctgaggacagttttctgtatgtctctttggttgttg 538
|||| || ||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 679 cttttactttaatttaatttaaaactgaggacagttttctgtatgtctcttcggttgttg 738
Query: 539 ttgctgctgctgctgctgctg------------ttttctgccagttatttacatgaaag 585
||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 739 ttgctgctgctgctgctgctgctgctgctgctgttttctgccagttatttacatgaaag 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_j22.g1 MSMg01no533_j22.g1 CHROMAT_FILE:
MSMg01no533_j22.g1 PHD_FILE: MSMg01no533_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:52 2005
(637 letters)
>mm_chr1_29139740_29140776
Length = 1037
Score = 1216 bits (629), Expect = 0.0
Identities = 635/637 (99%)
Strand = Plus / Minus
Query: 1 actgaatttttaataatggatatactaataagggcacctgtagactacaggtctcaatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 actgaatttttaataatggatatactaataagggcacctgtagactacaggtctcaatcc 748
Query: 61 caaacatgacatgataagtcaaaattctaattactaataggaggttaaagtaatactgaa 120
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 747 caaacatgacatgttaagtcaaaattctaattactaatgggaggttaaagtaatactgaa 688
Query: 121 tgtaatcaatcaagttatctttattaatatacagaacacaacatttttttaagaacacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tgtaatcaatcaagttatctttattaatatacagaacacaacatttttttaagaacacat 628
Query: 181 gttctctcaacagactttaaagcaaactactgtctttaaggaagtttgttagcaaaatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gttctctcaacagactttaaagcaaactactgtctttaaggaagtttgttagcaaaatat 568
Query: 241 aattagagattataatttaaagattgtattacttactcacaaagccataacagtatttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aattagagattataatttaaagattgtattacttactcacaaagccataacagtatttat 508
Query: 301 aagacacaatcatagaaaacttaaagttagaatgtccatggggtattgtttttatatatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aagacacaatcatagaaaacttaaagttagaatgtccatggggtattgtttttatatatt 448
Query: 361 ttcttaattccaaaaagtaaatttattttatttcaaagttgatacaatataaatgatata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttcttaattccaaaaagtaaatttattttatttcaaagttgatacaatataaatgatata 388
Query: 421 tacaagtagaaatatgtgtataagataataaatatatcatttatagcattgaaaaattgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tacaagtagaaatatgtgtataagataataaatatatcatttatagcattgaaaaattgc 328
Query: 481 tgttactcaattagtaaagaaataatgagtttcatgatcatatttataatgctaaataca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgttactcaattagtaaagaaataatgagtttcatgatcatatttataatgctaaataca 268
Query: 541 tcttacattttgagcattgatttaatttgtgtggatattgaaaaatacacagagattaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcttacattttgagcattgatttaatttgtgtggatattgaaaaatacacagagattaag 208
Query: 601 tgaatacatattaatttatatatttattattgcgtcc 637
|||||||||||||||||||||||||||||||||||||
Sbjct: 207 tgaatacatattaatttatatatttattattgcgtcc 171
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
