Query= MSMg01no533_l15.b1 MSMg01no533_l15.b1 CHROMAT_FILE:
MSMg01no533_l15.b1 PHD_FILE: MSMg01no533_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:00 2005
(473 letters)
>mm_chr1_72893952_72894826
Length = 875
Score = 787 bits (407), Expect = 0.0
Identities = 452/473 (95%), Gaps = 13/473 (2%)
Strand = Plus / Minus
Query: 5 gaattccaggacagttatggttacccagcaaaatctggtcccaaaaacaaacc--aaaaa 62
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 475 gaattccaggacagccatggttacccagcaaaatctggtcccaaaaacaaaccaaaaaaa 416
Query: 63 aatctgggtgagtgcatagagggtttttcaacacattttgcagtccctgtccccaaatgg 122
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 415 aatctgggtgagtgcatagaggttttttcaacacattttgcagtccctgtccccaaatgg 356
Query: 123 gatagttcttaatagatacgattcaaggcacatagttcccaatggacccctcagtacaga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gatagttcttaatagatacgattcaaggcacatagttcccaatggacccctcagtacaga 296
Query: 183 gaagtacatacagtatagagggcaccacgggcccccctcctaggcaatactacaagttgg 242
| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 295 ggagtccatacagtatagagggcaccacgggtccccctcctaggcaatactacaagttgg 236
Query: 243 aaagagccagcagtgactgcaaaaggtaagg-------ccttgtctaagttgttagaaac 295
||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 235 aaagagccagcagtgactgcaaaaggtaaggtatactaccttgtctaagttgttagaaac 176
Query: 296 cagatggtgttcagctaa--ga--aaggagtcagctcttccacaccaggtacagaactgg 351
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 175 cagatggtgttcagctaagggaggaaggagtcagctcttccacaccaggtacagaactgg 116
Query: 352 gtaccagtgttaacagctgcgcctgctgttgctaaggtgtcctagcatctaaaagccatc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gtaccagtgttaacagctgcgcctgctgttgctaaggtgtcctagcatctaaaagccatc 56
Query: 412 agtagaagtttgtcctacaccttcccttcccttcccttcccttaccttacctt 464
||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 55 agtagaagtttgtcctacaccttcccttcccttcccttcccttcccttccctt 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 875
Length adjustment: 10
Effective length of query: 463
Effective length of database: 865
Effective search space: 400495
Effective search space used: 400495
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_l15.g1 MSMg01no533_l15.g1 CHROMAT_FILE:
MSMg01no533_l15.g1 PHD_FILE: MSMg01no533_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:00 2005
(583 letters)
>mm_chr1_72755069_72756052
Length = 984
Score = 1114 bits (576), Expect = 0.0
Identities = 583/586 (99%), Gaps = 3/586 (0%)
Strand = Plus / Plus
Query: 1 atctacaaagcacttccatactcagggaaggttcaggggacattatggaggagggtcacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 atctacaaagcacttccatactcagggaaggttcaggggacattatggaggagggtcacg 258
Query: 61 aagtatgctatgagactttttctcctagcaatgccacaagattcacccataaactctcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aagtatgctatgagactttttctcctagcaatgccacaagattcacccataaactctcac 318
Query: 121 aaacaggactaccaaaataaacaaatacaacaccaatagatacaacacccaacaccccc- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaacaggactaccaaaataaacaaatacaacaccaatagatacaacacccaacacccccc 378
Query: 180 -acacacacacacacaaaactgaaggcaaccaagatatctgaataaacagacagatagtc 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cacacacacacacacaaaactgaaggcaaccaagatatctgaataaacagacagatagtc 438
Query: 239 ttccccagagaagagcacaccacaaatggttagctctaaagacatgcatacaaataagat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttccccagagaagagcacaccacaaatggttagctctaaagacatgcatacaaataagat 498
Query: 299 aatatatgatcagtaggttacacttaggaatatatatatagagagagataaatgaataca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aatatatgatcagtaggttacacttaggaatatatatatagagagagataaatgaataca 558
Query: 359 ataagcaataaattgttataatgctattagtttgaacaagagtaaattggagtataggga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ataagcaataaattgttataatgctattagtttgaacaagagtaaattggagtataggga 618
Query: 419 agggtatggagggaagaaaggaaagggaaaatgatttaattatattataatcttgaaaat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agggtatggagggaagaaaggaaagggaaaatgatttaattatattataatcttgaaaat 678
Query: 479 atccaagaagtttttaaaaaaaa-taaaaaagcaagttaaatccagtaactcccttaggc 537
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 679 atccaagaagtttttaaaaaaaaataaaaaagcaagttaaatccagtaactcccttaggc 738
Query: 538 tgtcttgaaccccttaactatactctgtagaaacctttttttgttt 583
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgtcttgaaccccttaactatactctgtagaaacctttttttgttt 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 984
Length adjustment: 10
Effective length of query: 573
Effective length of database: 974
Effective search space: 558102
Effective search space used: 558102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
