BAC Information

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BAC

Clone NameMSMg01-533M24
Chromosome1 (Build37)
Map Location 81,580,454 - 81,630,049
singlet/doubletdoublet
Overlap geneEG621020
Upstream geneDock10, LOC665092, 9430031J16Rik
Downstream geneLOC433328, EG665145, Irs1, Rhbdd1, Col4a4, Col4a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533M24.T7 (MSMg01no533_m24.b1)MSMg01-533M24.TJ (MSMg01no533_m24.g1)
ACCAG601646AG601647
length752753
length of high quality
(start - end)		597 (55 - 651)364 (75 - 438)
definitionCHROMAT_FILE: MSMg01no533_m24.b1 PHD_FILE: MSMg01no533_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:07 2005CHROMAT_FILE: MSMg01no533_m24.g1 PHD_FILE: MSMg01no533_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,629,456 - 81,630,049)(81,580,454 - 81,580,817)
sequence
NNNNNNNNNTTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCAGCACCTGGGATAAAGAGGCAGAGAGATCAGGAGT
TCAGGGACAATGTTGCCTATATAGGAAATTCAAGGCCAGCTTGAAATCTG
TCAGGCATTGTCTGAAAAATAAAGCAAATCATATAAAATTGACTTCATAA
TCTACAATTGTTATTTACATTAGAGATTATAAAATAAAAGACAGACATTG
GTGTCATATGGTTCTTTTGTTTCTTAAAGCACAAAAGTCAATTACTTGTA
TTTATAAAAAATCTAATATTGTACTCCATTTCTTTTGGGGAGAGTGCAAA
GAAGTAACTATAATAAGGCATTTTGATTTTTTTTATCATGAGACACAACA
GAAATAGTAATGATGCGGTGTCATCAGGATACAATATATTTCAGATGGTA
GTCTCTGAAAGAACACAGGGTACCAAATGAAACAAATATGGATAAGGGAG
ATAGTTCTAAATTGAGCATGAATATGAGTTCATTTTGTTTGTAGGAGAGC
TGTACAGTTGATGGATGTAAAGACAAAGGTCAAAGACCAATAGGTATCAG
TTATTAAAAAGCCTTATCTTGAGCAGCATAAAACAATAACAGCATGTTGT
CATAGAAACGCCACCAGGAGAGTATGATGTGATAGCTGCCACAAAACTGT
TGTTAGGTGGTGATTCCAGTGTTCAAAATTATCAGATGTGTATATGAGTG
TA

NCCCATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTAGAATCTCAAACTAGGGATGCAT
TTTAAAAGAAAGGGGTAACTGATCTAAAATGCAGGTTTTGATAGAACATT
TTTTAAAGTAAGAAATTGGGACTTCACTAACGTTGTGAAAAGAAAGCAAT
GGTGAAGATCGCATGGCCGCTTGGATTCTGTGTGTCTTAAGTCAGACATT
GCCTCAAAATTGGTTCTTAATTTCTACACTAATATAAAGTAAAAAGAAAA
AAAAACCAGAAATGTTATGGATGATTATTCAGGCTATTATTGGTCACTTA
TCCATACGTCTCCAAAAAATAAAATCTGATTTTAGAATTATTTAAAATAT
TAGCTAANATGTATATAAATGTATAAACTCTAACAATCACATGAAATTAC
TATTAAAACAAAGAAAAGTTGATCCACAGGAAATAGAACACCTCACACCT
GACTCTTGGGCATTATCACAGGTCACAGATGGAATATGTNCAGGAGTAGA
CGATGCCCCATTCTCCCCTGTATTCTTCTTCTGTTACCAGGGTGGCCCAG
CCTTTGGAGCCCTTCAGCCCATACTTTCTCCTGAGCATCATTGAGAGGAT
GAGGATGTTTGGAAGTTTGTCCANNGGGGCTGAAATTTGCCTTTTCCTGG
AATTCCTCCCTAAAAGGGAAAGTTTCAGGTTGACTTTTAAAAACCGGGGC
CAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_m24.b1 MSMg01no533_m24.b1 CHROMAT_FILE:
MSMg01no533_m24.b1 PHD_FILE: MSMg01no533_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:07 2005
         (597 letters)



>mm_chr1_81629253_81630249
          Length = 997

 Score = 1118 bits (578), Expect = 0.0
 Identities = 590/594 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagcacctgggataaagaggcagagagatcaggagttcagggacaatgttgcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ggaattccagcacctgggataaagaggcagagagatcaggagttcagggacaatgttgcc 738

                                                                       
Query: 64  tatataggaaattcaaggccagcttgaaatctgtcaggcattgtctgaaaaataaagcaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tatataggaaattcaaggccagcttgaaatctgtcaggcattgtctgaaaaataaagcaa 678

                                                                       
Query: 124 atcatataaaattgacttcataatctacaattgttatttacattagagattataaaataa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atcatataaaattgacttcataatctacaattgttatttacattagagattataaaataa 618

                                                                       
Query: 184 aagacagacattggtgtcatatggttcttttgtttcttaaagcacaaaagtcaattactt 243
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 617 aagacagacattggtgtcatatggttctcttgtttcttaaagcacaaaagtcaattactt 558

                                                                       
Query: 244 gtatttataaaaaatctaatattgtactccatttcttttggggagagtgcaaagaagtaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtatttataaaaaatctaatattgtactccatttcttttggggagagtgcaaagaagtaa 498

                                                                       
Query: 304 ctataataaggcattttgattttttttatcatgagacacaacagaaatagtaatgatgcg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctataataaggcattttgattttttttatcatgagacacaacagaaatagtaatgatgcg 438

                                                                       
Query: 364 gtgtcatcaggatacaatatatttcagatggtagtctctgaaagaacacagggtaccaaa 423
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtgttatcaggatacaatatatttcagatggtagtctctgaaagaacacagggtaccaaa 378

                                                                       
Query: 424 tgaaacaaatatggataagggagatagttctaaattgagcatgaatatgagttcattttg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgaaacaaatatggataagggagatagttctaaattgagcatgaatatgagttcattttg 318

                                                                       
Query: 484 tttgtaggagagctgtacagttgatggatgtaaagacaaaggtcaaagaccaataggtat 543
           ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tttgtagaagagctctacagttgatggatgtaaagacaaaggtcaaagaccaataggtat 258

                                                                 
Query: 544 cagttattaaaaagccttatcttgagcagcataaaacaataacagcatgttgtc 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cagttattaaaaagccttatcttgagcagcataaaacaataacagcatgttgtc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no533_m24.g1 MSMg01no533_m24.g1 CHROMAT_FILE:
MSMg01no533_m24.g1 PHD_FILE: MSMg01no533_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:07 2005
         (364 letters)



>mm_chr1_81580254_81581017
          Length = 764

 Score =  667 bits (345), Expect = 0.0
 Identities = 359/364 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagaatctcaaactagggatgcattttaaaagaaaggggtaactgatctaaaatgcag 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaaaatctcaaactagggatgcattttaaaagaaaggggtaactgatctaaaatgcag 260

                                                                       
Query: 61  gttttgatagaacattttttaaagtaagaaattgggacttcactaacgttgtgaaaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttgatagaacattttttaaagtaagaaattgggacttcactaacgttgtgaaaagaa 320

                                                                       
Query: 121 agcaatggtgaagatcgcatggccgcttggattctgtgtgtcttaagtcagacattgcct 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaatggtgaagatcacatggccgcttggattctgtgtgtcttaagtcagacattgcct 380

                                                                       
Query: 181 caaaattggttcttaatttctacactaatataaagtaaaaagaaaaaaaaaccagaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaattggttcttaatttctacactaatataaagtaaaaagaaaaaaaaaccagaaatg 440

                                                                       
Query: 241 ttatggatgattattcaggctattattggtcacttatccatacgtctccaaaaaataaaa 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 441 ttatggatgattattcaggctattattggtcacttatccataagtctccaagaaataaaa 500

                                                                       
Query: 301 tctgattttagaattatttaaaatattagctaanatgtatataaatgtataaactctaac 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 tctgattttagaattatttaaaatattagctaaaatgtatataaatgtataaactctaac 560

               
Query: 361 aatc 364
           ||||
Sbjct: 561 aatc 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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