Query= MSMg01no533_p15.b1 MSMg01no533_p15.b1 CHROMAT_FILE:
MSMg01no533_p15.b1 PHD_FILE: MSMg01no533_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:19 2005
(614 letters)
>mm_chr1_77612425_77613438
Length = 1014
Score = 1102 bits (570), Expect = 0.0
Identities = 588/594 (98%), Gaps = 1/594 (0%)
Strand = Plus / Minus
Query: 5 gaattctggacctttttatttgtacaggaggtgaaatagtaggtcctatgacaaatcaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 gaattctggacctttttatttgtacaggaggtgaaatagtaggtcctatgacaaatcaga 869
Query: 65 aatcacatgactatttggttggtgacagtgttgtgctggcaactcctcctaaacaaacaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 aatcacatgactatttggttggtgacagtgttgtgctggcaactcctcctaaacaaacaa 809
Query: 125 actacaatgtgtgtcatttgcccatttctttggtgcaaatactatcactgtgaccagttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 actacaatgtgtgtcatttgcccatttctttggtgcaaatactatcactgtgaccagttt 749
Query: 185 caagcttcttaaaagacatccttaagctccaagttggaagcgaacccagaaggttgtcct 244
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 748 caagcttcttaaaagacatccttaagttccaagttggaaacgaacccagaaggttgtcct 689
Query: 245 cttgcagaagagtagctggctccaacacataaagcacagctctgcattatagaaattgtg 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 cttgcagaagagtggctggctccaacacataaagcacagctctgcattatagaaattgtg 629
Query: 305 gtgtctatgctgtgcatatgagacttgctactctgggtaactgtagtatttcaataagaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gtgtctatgctgtgcatatgagacttgctactctgggtaactgtagtatttcaataagaa 569
Query: 365 tggaacatctattctaaaaagtgaatttgatcattcaacaaacattttattaccatgaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tggaacatctattctaaaaagtgaatttgatcattcaacaaacattttattaccatgaaa 509
Query: 425 tatggctccctaaggtgggtctgcacaggaaaaggcaggccacagaagcaacagaggttc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tatggctccctaaggtgggtctgcacaggaaaaggcaggccacagaagcaacagaggttc 449
Query: 485 taggacagagttctacaggcctacatctgcagtgaggaggtggggctgttccgcaggccc 544
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 448 taggacagagtcctacaggcctacatctgcagtgaggaggtggggctgttccgcagcccc 389
Query: 545 ctgtgcactggtcttgtcagga-agagcttgtctcccaggagggctgacacagg 597
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 388 ctgtgcactggtcttgtcaggacagagcttgtctcccaggagggctgacacagg 335
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_p15.g1 MSMg01no533_p15.g1 CHROMAT_FILE:
MSMg01no533_p15.g1 PHD_FILE: MSMg01no533_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:19 2005
(670 letters)
>mm_chr1_77442437_77443506
Length = 1070
Score = 1295 bits (670), Expect = 0.0
Identities = 670/670 (100%)
Strand = Plus / Plus
Query: 1 agagaatgcaggtttttaagcacctgcgatggctttccatgatctcagctttataaacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagaatgcaggtttttaagcacctgcgatggctttccatgatctcagctttataaacat 260
Query: 61 cacacagatacagaggactactttcactaaagtggaaaaactcaatgctgctgtgaaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacagatacagaggactactttcactaaagtggaaaaactcaatgctgctgtgaaacc 320
Query: 121 tcgtcataaaaattaattaatagggctttgcaacctccccctctttttcctcccatacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgtcataaaaattaattaatagggctttgcaacctccccctctttttcctcccatacct 380
Query: 181 tttatgattgttctctaaacctatcttaacctaaaataaaaactgtactggccccatcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatgattgttctctaaacctatcttaacctaaaataaaaactgtactggccccatcaa 440
Query: 241 gtattaaggtcacagataaggacgtggataattaagtggttccatagcatcggaggttgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtattaaggtcacagataaggacgtggataattaagtggttccatagcatcggaggttgg 500
Query: 301 gaaagaaaatgagttacccacaatttcctcggtgcgatttttctctacactagcttcatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaagaaaatgagttacccacaatttcctcggtgcgatttttctctacactagcttcatt 560
Query: 361 tatcatggtctgagaatgtgtcgatactaccaaaacctgtgttgaggacggatccgtcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatcatggtctgagaatgtgtcgatactaccaaaacctgtgttgaggacggatccgtcca 620
Query: 421 ctagccggacatgcaagaagaccacccacagtagccatccagggacttctccaaaaggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctagccggacatgcaagaagaccacccacagtagccatccagggacttctccaaaaggaa 680
Query: 481 tagatgtagtgatccacatatgctgaatgtgctgtggagataggacagccacagagagct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagatgtagtgatccacatatgctgaatgtgctgtggagataggacagccacagagagct 740
Query: 541 gccacatcagtccaaacgcatccacccccacaccatccactgaagcccgcctcctcaccc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gccacatcagtccaaacgcatccacccccacaccatccactgaagcccgcctcctcaccc 800
Query: 601 tatggcctggtctgcatgaatttgcctcctcttcgtctcccataatgacaagcgggaaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tatggcctggtctgcatgaatttgcctcctcttcgtctcccataatgacaagcgggaaaa 860
Query: 661 aggactttag 670
||||||||||
Sbjct: 861 aggactttag 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
