Query= MSMg01no534_b04.b1 MSMg01no534_b04.b1 CHROMAT_FILE:
MSMg01no534_b04.b1 PHD_FILE: MSMg01no534_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:26 2005
(644 letters)
>mm_chr1_81510806_81511849
Length = 1044
Score = 1162 bits (601), Expect = 0.0
Identities = 628/637 (98%), Gaps = 1/637 (0%)
Strand = Plus / Plus
Query: 8 ttctgtgagtaaaaatgaaacaacatatcttttactggaaggatcactagtaagtcaaaa 67
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctgtgagtaaaaatgaaacaaaatatcttttactggaaggatcactagtaagtcaaaa 267
Query: 68 atcgattgggaacttaaaatggcaaaaacacaagatactttttaaaaaaaaattgccagt 127
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 268 atcgattgggaacttaaaatggcaaaaacacaagatactttttttaaaaaaattgccagt 327
Query: 128 tgtaaattttttaagcacttggatgattttatgggagtttataaagaatgaggatactcc 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgtaaattttttaagcacttggatgattttatgggagtttataaagaatgaggatactcc 387
Query: 188 aaattttagtcataatttatatcttctctctgagcttatttcagttcctaattttaagta 247
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaattttagtcataatttgtatcttctctctgagcttatttcagttcctaattttaagta 447
Query: 248 ttattggtaagaaatatcatatctcttacacttgtcctcatgttttcctgataaaagcca 307
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttattggtaagaaatatcttatctcttacacttgtcctcatgttttcctgataaaagcca 507
Query: 308 aagggataaatgcacatcatgtctaaggaacaaaaagtatctctcctcctgttctggaag 367
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 508 aagagataaatgcacatcatgtctaaggaacaaaaagtatccctcctcctgttcttgaag 567
Query: 368 cagcaatatctatactggaaaagctagaaagggtctgaatgtttgccagtgattaacaat 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cagcaatatctatactggaaaagctagaaagggtctgaatgtttgccagtgattaacaat 627
Query: 428 gttgattatttttttcatggactgggcagccatttgcatatcttcttgataaatggatgc 487
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gttgatt-tttttttcatggactgggcagccatttgcatatcttcttgataaatggatgc 686
Query: 488 ccagataaatctctcaccttcaactataaccattttcaaataaaaatacaaatacaaatt 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ccagataaatctctcaccttcaactataaccattttcaaataaaaatacaaatacaaatt 746
Query: 548 tcaaaggcttagcaattaagagcattggctgctcttccagaggacctgggttcaattcct 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tcaaaggcttagcaattaagagcattggctgctcttccagaggacctgggttcaattcct 806
Query: 608 agcaaccataatgcagctcacaactgtatgtaactcc 644
|||||||||||||||||||||||||||||||||||||
Sbjct: 807 agcaaccataatgcagctcacaactgtatgtaactcc 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_b04.g1 MSMg01no534_b04.g1 CHROMAT_FILE:
MSMg01no534_b04.g1 PHD_FILE: MSMg01no534_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:26 2005
(658 letters)
>mm_chr1_81693839_81694896
Length = 1058
Score = 1046 bits (541), Expect = 0.0
Identities = 640/699 (91%), Gaps = 45/699 (6%)
Strand = Plus / Minus
Query: 1 aggttcaaaacaacttaggaaaggaaagtgtttacttttcagccataatccatcattgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 aggttcaaaacaacttaggaaaggaaagtgtttacttttcagccataatccatcattgac 897
Query: 61 tgaagttagacctggaactcaatgcacacacaataaataaaagctgctaacggttcatta 120
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 896 tgaagttagacctggagttcaatgcacacaccataaataaaagctgctaacggttcatta 837
Query: 121 tctagctggcataacaaaccgtgattaactctatttcttgaacatacttcaggactatct 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 836 tctagctggcataacaaaccgtgattaactctatttcttgaacacacttcaggactatct 777
Query: 181 gcctaaggatgatacgacctattgtaggctggaccttcatacatcaattaaagtcaagac 240
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gccttaggatggtacgacctattgtaggctggaccttcatacatcaattaaagtcaagac 717
Query: 241 aattcatgatagatatgccaacagatccaccagactcttacctgaaactttggtttcaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 aattcatgatagatatgccaacagatccaccagactcttacctgaaactttggtttcaga 657
Query: 301 ttattccagcctgttaacactgcataggacagactctgaaatggcaaggagcagaaagaa 360
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 656 ttattccagcctgttaaccctgcataggacagactcagaaatggcaaggagcagaaagaa 597
Query: 361 agatggttaattagtctccctcaattcaacccaaatgcccattgaacataccaccacttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 agatggttaattagtctccctcaattcaacccaaatgcccattgaacataccaccacttg 537
Query: 421 agtctttatgaaacacaaagcgccaaccacctgccactagatgaaggaagcaaagtacac 480
| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 536 attctttataaaacacaaagcaccaaccacctgccactagatgaaggaagcaaagtacac 477
Query: 481 acagtaggaaa--aacaaaacaaaacaaaacaaaacaaaaacaaaaacaaaaaaccaaac 538
|||||||||| |||||| |||| ||||||||||||||| ||||| ||||| |||||||
Sbjct: 476 ccagtaggaaacaaacaaa-caaa-caaaacaaaacaaaa-caaaa-caaaacaccaaac 421
Query: 539 cacattccttcacttatgaccaattctg-------------------------------- 566
||||||||||||||||||||||||||||
Sbjct: 420 cacattccttcacttatgaccaattctgaccatgtttcagattatctgggattgtgacag 361
Query: 567 -------gcatcttgtgccttagagtttaaggatatcttgggaggagccacttgtttgac 619
||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 360 attcttggcatcttgtgccttagagtttgaggatatcttgggaggagccacttgtttgac 301
Query: 620 agagaagtatactcaatgaggtcacttcgagccacatca 658
|||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agagaagtatactcaatgaggtcacttcgagccacatca 262
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
