Query= MSMg01no534_b14.b1 MSMg01no534_b14.b1 CHROMAT_FILE:
MSMg01no534_b14.b1 PHD_FILE: MSMg01no534_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:28 2005
(662 letters)
>mm_chr1_168037645_168038706
Length = 1062
Score = 998 bits (516), Expect = 0.0
Identities = 570/588 (96%), Gaps = 4/588 (0%)
Strand = Plus / Minus
Query: 5 gaattctacactggcctggagatccagtacctgggggtggaagtggatgacttcccggag 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 586 gaattctacactggcctggagatccagtacctgggggtggaagtggatgacttcccagag 527
Query: 65 gtggacatctcccaacatttccggaaagcagctgagttccttgacgaagctctgctgacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gtggacatctcccaacatttccggaaagcagctgagttccttgacgaagctctgctgacc 467
Query: 125 tacagaggtgagcgggtcctgcaggttcctggcagttggaaatctcccagtgggggaatg 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 466 tacagaggtgagcgggtcctgcaggttcctggcagttggaaatcccccagtgggggaatg 407
Query: 185 ttataaaaacttcctgtttgcctgggcagggatgtctgtcttcacgagcggttggtttct 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 406 ttataaaaacttcctgtttgcctgggcagggatgtctgtcttcatgagcggttggtttct 347
Query: 245 ctgagaagggaaagagtgaccattcactctgtgggccactattaagggcaggaacaggca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 346 ctgagaagggaaagagtgaccattcactctgtgggccactattaagggcaggaacgggca 287
Query: 305 gagagtgctgctctcacactctccccagatgcagtaggccttacactaggcagtgagggg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gagagtgctgctctcacactctccccagatgcagtaggccttacactaggcagtgagggg 227
Query: 365 aggggaaattaaagagaaggaccggccaggcagtggtggtgcac-gcctttaatcccagc 423
|||||||||||||||||||||| ||||||| |||||||| |||| || |||||||||||
Sbjct: 226 aggggaaattaaagagaaggacaggccaggtagtggtggcgcacatcc-ttaatcccagc 168
Query: 424 acttgggaggcagaggtaggcggatttctgagttcgaggccagcctggtctacagagttc 483
|||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 167 acttgggaggcagaggcgggcagatttctgagttcaaggccagcctggtctacagagttc 108
Query: 484 caggacagccagggctacacagaaaaaccctgtcttgaaaaacaaaataaagaaggacag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 107 caggacagccagggctacacagaaaaaccctgtcttgaaaaacaaaataaagaagaacag 48
Query: 544 aaggaggtaggggaggggg-aagagaaggaaggaagaaaaaggaggga 590
||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct: 47 aaggaggtaggggaggggggaagagaaggaaggaagaaga-ggaggga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_b14.g1 MSMg01no534_b14.g1 CHROMAT_FILE:
MSMg01no534_b14.g1 PHD_FILE: MSMg01no534_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:29 2005
(570 letters)
>mm_chr1_167905042_167906012
Length = 971
Score = 957 bits (495), Expect = 0.0
Identities = 553/573 (96%), Gaps = 5/573 (0%)
Strand = Plus / Plus
Query: 1 cttcatttttctttaaacccataaatcacttgtcccaaaagacagaaatgttaaactata 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 cttcatttttctttaaacccataaatcacttctcccaaaagacagaaatgttaaactata 260
Query: 61 agaaagaacagaactccaggagtagtgatgcacacctttgatcccataattcaggaggcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaagaacagaactccaggagtagtgatgcacacctttgatcccataattcaggaggcg 320
Query: 121 gaggaaggaggatctctgtgagttcagcctggtctacagagtgagttccagaaaagccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggaaggaggatctctgtgagttcagcctggtctacagagtgagttccagaaaagccag 380
Query: 181 ggctacactgagaaactgtctcaaaaataccaaaaaacagaaaagagaaaacagaaaatg 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 ggctacactgagaaactgtctcaaaaataccaaaaaatagaaaagagaaaacagaaaatg 440
Query: 241 gcattttagaatcacatctggaggaagagtacagctcactcagtaactgcagggacaaaa 300
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||
Sbjct: 441 gcattttagaatcacatctggaggaagagtacagctcactcaataactgctgggacacaa 500
Query: 301 atcagctttcctatgctcagacctcaactgtcagacctagagcttagcctcagaagcttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcagctttcctatgctcagacctcaactgtcagacctagagcttagcctcagaagcttt 560
Query: 361 gacgagctgctctactgaaacctccagattcttaccctataaaacatgtgtaccctgaca 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 gacgagctgctctactgaaacctccagattcttaccctataaaacatgtgtatcctgaca 620
Query: 421 cac-taattagctaaacagctaagcacataacctg-tatatcaatcagtgttaataaatg 478
||| ||||||||||| ||||||||||||||||||| | |||||||||| |||||||||||
Sbjct: 621 cacctaattagctaagcagctaagcacataacctggtgtatcaatcagggttaataaatg 680
Query: 479 ctaccaacatgtacagtcttgtctgaatagatcc-ttactatttcctacaaagcaatcag 537
| ||| ||| | |||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 681 ccaccgacagg--cagtcttgtctgaatagagcccttactatttcctacaaagcaatcac 738
Query: 538 tctatttcccattttttccaatgttattttggt 570
|||||||||||||||| ||||||||||||||||
Sbjct: 739 tctatttcccatttttcccaatgttattttggt 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space: 538160
Effective search space used: 538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
