BAC Information

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BAC

Clone NameMSMg01-534D19
Chromosome1 (Build37)
Map Location 179,200,159 - 179,381,540
singlet/doubletdoublet
Overlap geneZfp238
Upstream genePld5, Cep170, Sdccag8, LOC666235, Akt3
Downstream geneEG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534D19.T7 (MSMg01no534_d19.b1)MSMg01-534D19.TJ (MSMg01no534_d19.g1)
ACCAG601969AG601970
length755759
length of high quality
(start - end)		641 (57 - 697)582 (68 - 649)
definitionCHROMAT_FILE: MSMg01no534_d19.b1 PHD_FILE: MSMg01no534_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:40 2005CHROMAT_FILE: MSMg01no534_d19.g1 PHD_FILE: MSMg01no534_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,380,900 - 179,381,540)(179,200,159 - 179,200,740)
sequence
TTGCGGGCGCTATCGACTCACTATTTCGAGAGGATCCGCGGAATTCCAAG
AGTCTGTCAGCCCTTACCAGACACAAACCCAACAAGACAGGCAAAAAATT
GAGGAGGGGGCAATGACAAAGGGGAAGGACAGCTCTAATGGTGCATTACT
TAAATGTTTTAAAATTTGAACTCAAACACTAAGATCTTTTGAGTGCTGGT
AAGAAGAACAGACATACACAGCTCATCTTGAACAACTGAATGCCTGCTAA
TTCAATTGCCTAGACTTCCACTCATTAGCCAAGCAGTCTTCCAAATTAAG
ACATCCGGTCTCCTTCAATTTTCCACTTAAAGCCAGAACATGGGAGAATG
GATTTGACCAATCAACTTAGGATAAAATCTCGCATGAAAAGTGACTTGTA
TTGTGTATGGGTTAGTAGTTGTATTATGAAAACCTACCTTTGCCACTTCA
AGTTCTTTGCATTTATAATTTCTAGGGAATTATCTCAACAGTCTTGATCT
ACACTAGAGATGGGTTATATTTTTCAATGTGCATTTAGTGTCTCCTTAAA
TAGTGAGAATGTGCACATTTCCATTTGGGTGACCCTAAAGCAGTCTAATA
CTTCATAAGCTGAATAAAACTTGACATTAAAATGAAGACGTCATGCACTA
TACTAACTCCAAATCTGTTGTGCGACTATAATACAAAAAGCACACAAGGA
ATTCTCAGTTCATATAATTTATTGCAGTTAGCACACAGTTTAAAAATTCA
CCAAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGGAGGCAGAAACAAGTGGAATTTTGTGAGTTA
GAGACTAGCCTGATCTACATAGTGAGTGGTCTACATAGAAATTTTAACAT
TGAAACCAGTGGAATTTCATCTCTATACATTCCAAGATATAGATGCCATA
AAACAAAGAGTGAAAATGTAAAGGAACATTTTCTAGAAGAAAAGATCACT
TAGACAAGGATGACACTGAACCATAAAAACCCTTAGATTCAGGCATGCTC
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACAGAGAGAGAGAGAA
TTGTTTATTGTGTAAAAGAGAAAGAGTTAATAAGAGGCAAAATTTTAGAA
TGATAGATCTACTCTACCCCATGTGTGTAAAATGAAGAAGACAAACTATT
TTGATAAAATCTAAATATGCTTCTAGAACCTTGAACTACATATAGTAATT
GCTATAGTTTGGAATGATTTTTTTTTCTTTTTACATTGTTGGAGATTAAA
CCCAAGGCTTCATCCAAATGAGGCAAGCTTGCTACTACTGAGCACCAAGT
TCCAGTCCTATAACTTGATAATTATTGAATTATGATTTCAACATAAGTTT
AGATGGGTTAAGGAACTTTCCCAGATCAGCAAACAACAACTCTAGGACCC
TCACCCACAGTCAGCCTTATAACACAGCAAGTCTTCTTCTTGCTGTCCTC
AGAAATGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_d19.b1 MSMg01no534_d19.b1 CHROMAT_FILE:
MSMg01no534_d19.b1 PHD_FILE: MSMg01no534_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:40 2005
         (641 letters)



>mm_chr1_179380700_179381740
          Length = 1041

 Score = 1239 bits (641), Expect = 0.0
 Identities = 641/641 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagcccttaccagacacaaacccaacaagacaggcaaaaaattgaggagggggcaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tcagcccttaccagacacaaacccaacaagacaggcaaaaaattgaggagggggcaatga 782

                                                                       
Query: 61  caaaggggaaggacagctctaatggtgcattacttaaatgttttaaaatttgaactcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 caaaggggaaggacagctctaatggtgcattacttaaatgttttaaaatttgaactcaaa 722

                                                                       
Query: 121 cactaagatcttttgagtgctggtaagaagaacagacatacacagctcatcttgaacaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cactaagatcttttgagtgctggtaagaagaacagacatacacagctcatcttgaacaac 662

                                                                       
Query: 181 tgaatgcctgctaattcaattgcctagacttccactcattagccaagcagtcttccaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgaatgcctgctaattcaattgcctagacttccactcattagccaagcagtcttccaaat 602

                                                                       
Query: 241 taagacatccggtctccttcaattttccacttaaagccagaacatgggagaatggatttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 taagacatccggtctccttcaattttccacttaaagccagaacatgggagaatggatttg 542

                                                                       
Query: 301 accaatcaacttaggataaaatctcgcatgaaaagtgacttgtattgtgtatgggttagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 accaatcaacttaggataaaatctcgcatgaaaagtgacttgtattgtgtatgggttagt 482

                                                                       
Query: 361 agttgtattatgaaaacctacctttgccacttcaagttctttgcatttataatttctagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agttgtattatgaaaacctacctttgccacttcaagttctttgcatttataatttctagg 422

                                                                       
Query: 421 gaattatctcaacagtcttgatctacactagagatgggttatatttttcaatgtgcattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaattatctcaacagtcttgatctacactagagatgggttatatttttcaatgtgcattt 362

                                                                       
Query: 481 agtgtctccttaaatagtgagaatgtgcacatttccatttgggtgaccctaaagcagtct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agtgtctccttaaatagtgagaatgtgcacatttccatttgggtgaccctaaagcagtct 302

                                                                       
Query: 541 aatacttcataagctgaataaaacttgacattaaaatgaagacgtcatgcactatactaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatacttcataagctgaataaaacttgacattaaaatgaagacgtcatgcactatactaa 242

                                                    
Query: 601 ctccaaatctgttgtgcgactataatacaaaaagcacacaa 641
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctccaaatctgttgtgcgactataatacaaaaagcacacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no534_d19.g1 MSMg01no534_d19.g1 CHROMAT_FILE:
MSMg01no534_d19.g1 PHD_FILE: MSMg01no534_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:41 2005
         (582 letters)



>mm_chr1_179199959_179200940
          Length = 982

 Score = 1118 bits (578), Expect = 0.0
 Identities = 581/582 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaggcagaaacaagtggaattttgtgagttagagactagcctgatctacatagtgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaggcagaaacaagtggaattttgtgagttagagactagcctgatctacatagtgagt 260

                                                                       
Query: 61  ggtctacatagaaattttaacattgaaaccagtggaatttcatctctatacattccaaga 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ggtctacatagaaattttaacattgaaaccagtggaatttcagctctatacattccaaga 320

                                                                       
Query: 121 tatagatgccataaaacaaagagtgaaaatgtaaaggaacattttctagaagaaaagatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatagatgccataaaacaaagagtgaaaatgtaaaggaacattttctagaagaaaagatc 380

                                                                       
Query: 181 acttagacaaggatgacactgaaccataaaaacccttagattcaggcatgctctgtgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttagacaaggatgacactgaaccataaaaacccttagattcaggcatgctctgtgtgt 440

                                                                       
Query: 241 gtgtgtgtgtgtgtgtgtgtgtgtgtgacagagagagagagaattgtttattgtgtaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgtgtgtgtgtgtgtgtgtgtgtgacagagagagagagaattgtttattgtgtaaaa 500

                                                                       
Query: 301 gagaaagagttaataagaggcaaaattttagaatgatagatctactctaccccatgtgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagaaagagttaataagaggcaaaattttagaatgatagatctactctaccccatgtgtg 560

                                                                       
Query: 361 taaaatgaagaagacaaactattttgataaaatctaaatatgcttctagaaccttgaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaatgaagaagacaaactattttgataaaatctaaatatgcttctagaaccttgaact 620

                                                                       
Query: 421 acatatagtaattgctatagtttggaatgatttttttttctttttacattgttggagatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatatagtaattgctatagtttggaatgatttttttttctttttacattgttggagatt 680

                                                                       
Query: 481 aaacccaaggcttcatccaaatgaggcaagcttgctactactgagcaccaagttccagtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaacccaaggcttcatccaaatgaggcaagcttgctactactgagcaccaagttccagtc 740

                                                     
Query: 541 ctataacttgataattattgaattatgatttcaacataagtt 582
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctataacttgataattattgaattatgatttcaacataagtt 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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