BAC Information

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BAC

Clone NameMSMg01-534F06
Chromosome1 (Build37)
Map Location 159,918,428 - 159,918,754
singlet/doubletsinglet
Overlap genenone
Upstream gene1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
Downstream gene6430517E21Rik, Astn1, Pappa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534F06.T7 (MSMg01no534_f06.b1)MSMg01-534F06.TJ (MSMg01no534_f06.g1)
ACCAG602039AG602040
length739765
length of high quality
(start - end)		687 (44 - 730)217 (74 - 290)
definitionCHROMAT_FILE: MSMg01no534_f06.b1 PHD_FILE: MSMg01no534_f06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:48 2005CHROMAT_FILE: MSMg01no534_f06.g1 PHD_FILE: MSMg01no534_f06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTATATCCAGAAATAAAACAAAAGAAAACTGACATGACTGTGTAAACT
CAAGTCCCAGAAGGCCATATACACTAACAGAAAATACAAAATAATTAGAC
ATTATTAATATACCAAAATGAATAAAAGATTAAATTTTTATTTTTTAAAA
ATATGAACAAAGAATGTTCAAAACAAGTGAAGAGCATTTTGAAATAACAG
TCTTACTTCTAAATAAAAACTCAGAGTACAAATAAACTCAATTCTTCAAC
TAAAAGACACACAGAAGCTAAGTGACTATATTACAAGGCTAACAATGATA
CTATTGCTTATAAGTAGAAATAGAAACCAAATAAAGAACAGGAATTGAAA
TGCTATTCTAGGCAAATGGAAACCTAGCAAATGGGAATGTCTGGACTTAT
ATTAGATAAAACAGACTTCATAGGAAAAACAATGAGAGCTAAAGAAGGCA
TGCATATAATGAACAAGCAAAAATTCAATAGCAAAAAAAAATAATGATTT
TAAATTTATGTTCCTAATGTTGACAGATTCAACTCTCAGACAAAAGAAGA
CAGGCTGCTGAGGTCAGGGTGTGTCTGTGTCAGTATTAGATTTCCTGAAA
GGAGGACCTGAGAAGCAATTAACTACAATTTTGAAGGTGAAGCCTAAGCT
GTAACAGATATTCCAAGATGCAGGCATCAAGTGGAGCCC

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTCTTTCCCTTTCCCTTTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTAATCTCCTTT
TTTATTATACTGAACAGAAAATAGGTTAAGGAATATGATAATCCACTGTT
TGGTATGCACAATGCACAGATGCACAGATGGTGTGTGTGTGCATGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGAGATTTNNNNTGT
TTTTTTTTTTTTTTTTTTTTTTNTTGTTGTTTGGGTTTGTTGTTTGTCGT
GTTTTTTTTTTTTGTTTTTTTTTGTGTGTTTTGGTGTTTGTGTGTTTGTT
TNTTNTTTTTTNNTTTTTTTTTTTTTTTTTGGGGGTTTTTGTTTTTTTTG
TTTTTTTTTTGGTTGTTGTGGGTTTTTGTTGTTTGTGTTTTCTTGTTTTT
TTTTTTTTGTTGTGGGTGTTTTGTTTGGTTGTTTTGTTTCGGTTGGGTTT
TTTTTTTTGTGTCTTTTTGTGCTTTTTTTTCTTGTTTTTTTTTTCCCCGT
CTCTTCCCGCCTGTTTTTGTCCTTTCCTTCCCTTTTTGCTTTCCTTCTCT
TTTCTTTTTTTGCTTTTCTCTCTTCTTTCTTCGCCTCTCTTCATTACTTT
TGCGTTGTTCTTTTTTATTGCTCATACGCGGGTTTCATCTCGCGTTCTTC
TTGTCTCTATCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_f06.b1 MSMg01no534_f06.b1 CHROMAT_FILE:
MSMg01no534_f06.b1 PHD_FILE: MSMg01no534_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:48 2005
         (687 letters)



>mm_chr1_159918428_159919514
          Length = 1087

 Score =  625 bits (323), Expect = 0.0
 Identities = 326/327 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctatatccagaaataaaacaaaagaaaactgacatgactgtgtaaactcaagtc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggaattctatatccagaaataaaacaaaagaaaactgacatgactgtgtaaactcaagtc 268

                                                                       
Query: 64  ccagaaggccatatacactaacagaaaatacaaaataattagacattattaatataccaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ccagaaggccatatacactaacagaaaatacaaaataattagacattattaatataccaa 208

                                                                       
Query: 124 aatgaataaaagattaaatttttattttttaaaaatatgaacaaagaatgttcaaaacaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 aatgaataaaagattaaatttttattttttaaaaatatgaacaaagaatgttcaaaacaa 148

                                                                       
Query: 184 gtgaagagcattttgaaataacagtcttacttctaaataaaaactcagagtacaaataaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gtgaagagcattttgaaataacagtcttacttctaaataaaaactcagagtacaaataaa 88

                                                                       
Query: 244 ctcaattcttcaactaaaagacacacagaagctaagtgactatattacaaggctaacaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  ctcaattcttcaactaaaagacacacagaagctaagtgactatattacaaggctaacaat 28

                                      
Query: 304 gatactattgcttataagtagaaatag 330
           |||||||||||||||||||||| ||||
Sbjct: 27  gatactattgcttataagtagagatag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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