XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTAAACAACAAAGTTAAAATATTCCCAGTTTTAGCTAAATAGACCCATG
TTAAGATAATAAGACATGAAGCAAAATAGTTTTCAATTATTGAAAACTTC
CTCTGCCTCCTATTAGTCATGGACAATGCCATTTAAATTTAAGAAATAAT
GTGTAAGTGAGTTATTATTTTTTTAAAAAATGTCTAAAGTAAACAGGTGT
AATTTATATTGCAAAGTACTTGATTTCATAGTTATTTTAATAATTTATAT
ACTTATAATTTTCAGTTCACCTAAAGTTTGTAACCAATTCAAACCATTAG
AAATTTTTCTATATTCATATGAAACCCAAGTAAATAAAATTTATAGAAAT
TGTGAGAATTAGATGTAATTAACCCAATTCATAAAACTATTCCCACCTCC
ACATTTTGACAATAAAATTCATACAAACTTTCAATTGTCACCTTTCCTCT
TAAAGCATGTATAATTGAAGATACTCCTGGCCTGACTTCATTAGTTGAGT
TAAGGTCTAAGGTAGGAGAGAATATATGTGACTTTCTCTTACTTATTTAA
CATTTTGTTTTTCTTATGATGTTTCACATAGGTTTACCTTGAGCCCCAGC
ACTCTTTTGAGTGAAAGGCATCTTTACTTGGAGTATTTTCACCATTTTAA
ATATCCTTGTCTAAGGACAGACTACATT

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATGAAAATGAAAAATTACTGCATGGCAAA
GGACACTGTCATTTGGACCAAGAAGCATCCTATAGAATTCAGATTTTTTT
TACCAACTACACAGCAAATAGAGTGGTAATATCGAATATATATATATATG
TGTATATATATATATATATACACGTATATATATATAAAGAATTTTAAAAA
TCAAATATCAAGAAAACAAATAACACAGCTAAAATTGTGGTATAGATATA
AACTAAGAATTCTCAATTTAAGAGGAAATCCAAATGGCTCTAAAACACTT
TTAGAGGCTTTCAACATTTTCAATCACCTGAGGAATAGAAATCACAACCA
TTTTGAGATTCCATTTAAAACTTGTAAGTGTTGCTAAAACCAATAAAACA
AGTCACAGCTCATTTGAGTGAAGATGTGACGTAAGGNGAGCACCCATTCA
TTAGTTAGGACTGTAAGCTCTTATAGCTACTACAAGTTTTCAATGAGGTG
GTTGCTTATGAAGATGGGAATCAATCTAATAGCCAGCTTTTACCTACTGG
ACATAGGCCCAAAGGTTACTTCTTTTACCATAGCGAAAATTGCTCAAGCA
TATTCATTGCTGCTCCATTAATAGTAGCCGGAATTCAGAAACAACCTACA
TGTCCCTCAAAGAGAAGAATGAGT

Query= MSMg01no534_l19.b1 MSMg01no534_l19.b1 CHROMAT_FILE:
MSMg01no534_l19.b1 PHD_FILE: MSMg01no534_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:21 2005
         (688 letters)



>mm_chr1_150355355_150356440
          Length = 1086

 Score = 1195 bits (618), Expect = 0.0
 Identities = 667/684 (97%), Gaps = 2/684 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttaaacaacaaagttaaaatattcccagttttagctaaatagacccatgttaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttaaacaacaaagttaaaatattcccagttttagctaaatagacccatgttaa 264

                                                                       
Query: 65  gataataagacatgaagcaaaatagttttcaattattgaaaacttcctctgcctcctatt 124
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 gataataagacatgaagcaaaatagttttcaattactgaaaacttcctctgcctcctatt 324

                                                                       
Query: 125 agtcatggacaatgccatttaaatttaagaaataatgtgtaagtgagttattattttttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 325 agtcatggacaatgccatttaaatttaagaaataatgtgtaagtgagttattatttttt- 383

                                                                       
Query: 185 aaaaaatgtctaaagtaaacaggtgtaatttatattgcaaagtacttgatttcatagtta 244
            |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 384 -aaaaatgtctaaagtaaacaggtgcaatttatattgcaaagtacttgatttgatagtta 442

                                                                       
Query: 245 ttttaataatttatatacttataattttcagttcacctaaagtttgtaaccaattcaaac 304
           |||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 443 ttttaataatttatttactgataatttttagttcacctaaagtttgtaaccaattcaaac 502

                                                                       
Query: 305 cattagaaatttttctatattcatatgaaacccaagtaaataaaatttatagaaattgtg 364
           |||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 503 cattagaaatgtttctatattcatatgaaacccaagtaattaaaatttgtagaaattgtg 562

                                                                       
Query: 365 agaattagatgtaattaacccaattcataaaactattcccacctccacattttgacaata 424
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 563 agaattagatgtaattaacccaattcataaaactattcccacctccacgttttgacaata 622

                                                                       
Query: 425 aaattcatacaaactttcaattgtcacctttcctcttaaagcatgtataattgaagatac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaattcatacaaactttcaattgtcacctttcctcttaaagcatgtataattgaagatac 682

                                                                       
Query: 485 tcctggcctgacttcattagttgagttaaggtctaaggtaggagagaatatatgtgactt 544
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 683 tcctggcctgacttcattagttgagctaaggtctaaggtaggagagaatatatgtgactt 742

                                                                       
Query: 545 tctcttacttatttaacattttgtttttcttatgatgtttcacataggtttaccttgagc 604
           |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 743 tctcttacttgtttaacattttgtttttcttatgatgtttcacataggtttacattgagc 802

                                                                       
Query: 605 cccagcactcttttgagtgaaaggcatctttacttggagtattttcaccattttaaatat 664
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 803 cccagcactctcttgagtgaaaggcatctttacttggagtattttcaccattttacatat 862

                                   
Query: 665 ccttgtctaaggacagactacatt 688
           ||||||||||||||||||||||||
Sbjct: 863 ccttgtctaaggacagactacatt 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1086
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1076
Effective search space:   729528
Effective search space used:   729528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)