Query= MSMg01no534_n17.b1 MSMg01no534_n17.b1 CHROMAT_FILE:
MSMg01no534_n17.b1 PHD_FILE: MSMg01no534_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:30 2005
(574 letters)
>mm_chr1_118424996_118425972
Length = 977
Score = 739 bits (382), Expect = 0.0
Identities = 433/454 (95%), Gaps = 10/454 (2%)
Strand = Plus / Minus
Query: 125 atggtgttggaccagtagctaaaagctgtaatgttgagaaaacaactaccagtcagagag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 atggtgttggaccagtagctaaaagctgtaatgttgagaaaacaactaccagtcagagag 918
Query: 185 agaggggggtgtggggaatgagaacttggaatagtgtggaccttttaaatttcaaagatt 244
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 917 aga--ggggtgtggggaatgagaacttggaatagtgtggacctttgaaatttcaaagatt 860
Query: 245 gacgaaactggcacatctcctccaataaaaagtccactaattgttaatcaagaaatttca 304
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gacaaaactggcacatctcctccaataaaaagtccactaattgttaatcaagaaatttca 800
Query: 305 aatatatgagcctatattcattcagttcaccacaataattagcaacaaaggtagcctttc 364
|||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||||
Sbjct: 799 aatatatgagcctatactcattcagtccactacaataattagcaacaaaactagcctttc 740
Query: 365 tcctccatatgcatagcttgtagatgatcagactgttgtgttcactggctgcccaccacc 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 739 tcctccatatgcatagcttgtagatgatcagactgttgtgttcactggctgcccactacc 680
Query: 425 tacgcactattatgagtggtgtcagctgaaaaattgatgttggaatactcatgccataac 484
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tatgcactgttatgagtggtgtcagctgaaaaattgatgttggaatactcatgccataac 620
Query: 485 ttttccaggaggatttttgtttgtt----tttgtttttcttaaaaaaaagagattttcca 540
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 619 ttttccaggaggatttttgtttgttagtttttgtttttcttaaaaaaa-gagattttcca 561
Query: 541 ttgataggacacgatgaactggctgtgtttaaaa 574
||||||| |||||||||||||| |||||||||
Sbjct: 560 ttgatagaacacgatgaactgg---tgtttaaaa 530
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 977
Length adjustment: 10
Effective length of query: 564
Effective length of database: 967
Effective search space: 545388
Effective search space used: 545388
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_n17.g1 MSMg01no534_n17.g1 CHROMAT_FILE:
MSMg01no534_n17.g1 PHD_FILE: MSMg01no534_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:30 2005
(543 letters)
>mm_chr1_118276627_118277569
Length = 943
Score = 1007 bits (521), Expect = 0.0
Identities = 535/543 (98%), Gaps = 6/543 (1%)
Strand = Plus / Plus
Query: 1 aattaaagactgaataaaaaatggaggtgagtttaaagtatggaaaagcaaaggaatatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattaaagactgaataaaaaatggaggtgagtttaaagtatggaaaagcaaaggaatatg 260
Query: 61 aggaaaatcagtaacaacactcaaaggtaaactgagctggactgattttctttcactagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaaaatcagtaacaacactcaaaggtaaactgagctggactgattttctttcactagc 320
Query: 121 aggggagttggtgttcaaggggttaactcatcttgtgtgctttcaggtctgtgttgtaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggggagttggtgttcaaggggttaactcatcttgtgtgctttcaggtctgtgttgtaac 380
Query: 181 ctctctgttttgaccagggcctctagtcacctctgggttatttctaagagttaatgctct 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ctctctgttttgaccagggcctctagtcgcctctgggttatttctaagagttaatgctct 440
Query: 241 gttggtttgatgcttctcacaaagttaagcttccattttatcagcttaactctaatcttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttggtttgatgcttctcacaaagttaagcttccattttatcagcttaactctaatcttg 500
Query: 301 aaaataactggaaatctgaatagttctcgtcatgaatatttcagataaagaccacttgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaataactggaaatctgaatagttctcgtcatgaatatttcagataaagaccacttgac 560
Query: 361 ctttacatggagttagttgttcaacctctgtgtgtgtgtgtgtgtgtgtgtgtgtgttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 ctttacatggagttagttgttcaacctctgtgtgtgtgtgtgtgtgtgtgtgt------a 614
Query: 421 tgtgtgtgtacacttgcttctgtatttgtgtatgtatacgtctgaatacatgttatcctc 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 615 tgtgtgtgtacacttgcttctgtgtttgtgtatgtatacgtctgaatacatgttatcctc 674
Query: 481 tgtaaaaccagtgttctgtgggaccccgatccagctggaaatggccaaagtgttacagct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tgtaaaaccagtgttctgtgggaccccgatccagctggaaatggccaaagtgttacagct 734
Query: 541 ctc 543
|||
Sbjct: 735 ctc 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
