Query= MSMg01no534_n18.b1 MSMg01no534_n18.b1 CHROMAT_FILE:
MSMg01no534_n18.b1 PHD_FILE: MSMg01no534_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:30 2005
(602 letters)
>mm_chr1_61894566_61895568
Length = 1003
Score = 1056 bits (546), Expect = 0.0
Identities = 564/570 (98%), Gaps = 1/570 (0%)
Strand = Plus / Minus
Query: 4 ggaattc-tttgcttgccaaatacagccacaagattgaaatgaagcctcagctaaacagc 62
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 570 ggaattcttttgcttgccaaatacagccacaagattgaaatgaagcctcagctcaacagc 511
Query: 63 tcaagcaggtgcattcagtgctactttttatataaaattcacatcttctctttcatttga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tcaagcaggtgcattcagtgctactttttatataaaattcacatcttctctttcatttga 451
Query: 123 ggaaatccagcatagagttgggtaagtcatctataccttagatctgactttgcttaaagg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ggaaatccagcatagagttgggtaagtcatctataccttagatctgactttgcttaaagg 391
Query: 183 cagtccatacaacatttaatagtgttctcatgaaatattatggttatttaatatgacaat 242
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 390 cagtccatacaacatttaatagcgttctcatgaaatattatggttatttaaaatgacaat 331
Query: 243 tggcaggaaataagaaaagtcagtcataggcatgttgaattttctgtcttttgagcttct 302
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tggcaggaaatatgaaaagtcagtcataggcatgttgaattttctgtcttttgagcttct 271
Query: 303 gagctatacttctgtgccatgtcatcagaatggtgccatatatgactaccttattttgac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gagctatacttctgtgccatgtcatcagaatggtgccatatatgactaccttattttgac 211
Query: 363 cctaaaaatacacatacataaacacatacacacatacacatttaagtgcagctccagcct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 cctaaaaatacacatacataaacacatacacacatacacatttaagtgcagctccagcct 151
Query: 423 taatcaaagaagtatctttttatagagggcaatggtttactgcagattcataggctcata 482
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 150 taatcaaagaagtatctttttatagagggcaatggtttactgcagaatcataggctcata 91
Query: 483 tctggttaaagtattgagaataagttactgttcagaccccagctctaaatgacacatctt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 tctggttaaagtattgagaataagttactgttcagaccccagctctaaatgacacatctt 31
Query: 543 tatcaccaccagcagcaaggctcaagggac 572
||||||||||||||||||||||||||||||
Sbjct: 30 tatcaccaccagcagcaaggctcaagggac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1003
Length adjustment: 10
Effective length of query: 592
Effective length of database: 993
Effective search space: 587856
Effective search space used: 587856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_n18.g1 MSMg01no534_n18.g1 CHROMAT_FILE:
MSMg01no534_n18.g1 PHD_FILE: MSMg01no534_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:30 2005
(602 letters)
>mm_chr1_61743941_61744942
Length = 1002
Score = 716 bits (370), Expect = 0.0
Identities = 495/602 (82%), Gaps = 99/602 (16%)
Strand = Plus / Plus
Query: 1 ttccttaaaactacagatgggactgaactcgcccattttacagaagacagttagtgtcaa 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ttccttaaaactacagatgggactgaactcgcccattttacagaagaccgttagtgtcaa 260
Query: 61 aaagttctgtgtgtgacgatatggtccaatgatgattatctgtggtggtttgaatgagaa 120
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 aaagttttgtgtgtgacgatatggtccagtgatgattatctgtggtggtttgaatgagaa 320
Query: 121 tggccccttaggctcatatacttggatttttgtttcccagttgatgaactacttaggaag 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggccccttaggctcatataattggatttttgtttcccagttgatgaactacttaggaag 380
Query: 181 gattaggaagtgtggctttgttggtggaggcgtgttaataaggatagactttgagttttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattaggaagtgtggctttgttggtggaggcgtgttaataaggatagactttgagttttc 440
Query: 241 atgtcagagctattcttactttcctgctttttctatcatgtggatcagaatgtaagctct 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtcagatctattcttactttcctgctttttctatcatgtggatcagaatgtaagctct 500
Query: 301 cagctactgctccaatatcatttctgcctgcctgctagcctgctgctatgctccaccata 360
||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagctactgctccaatatcatttctgcctgcctgctag---------------------- 538
Query: 361 atgaccatggactaatccttcaaactataagcaagcccccaattaaatgctttcttttat 420
Sbjct: 538 ------------------------------------------------------------ 538
Query: 421 aagttgccttggtcatggtgtcttctcacagcaatagaagaataactaagatactccgag 480
|||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 539 -----------------gtgtcttctcacagaaatagaagaataactaagatactcccag 581
Query: 481 aggctccagagagacacagtttgggttcaagctttggtgctgctaccttctcatgtggca 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 582 aggctccagagagacacagtttggattcaagctttggtgctgctaccttctcatgtggca 641
Query: 541 gctgtgggcagtgcattctctccatatattttgccatatgtaaatgagaactacctactt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gctgtgggcagtgcattctctccatatattttgccatatgtaaatgagaactacctactt 701
Query: 601 ca 602
||
Sbjct: 702 ca 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
