BAC Information

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BAC

Clone NameMSMg01-534P10
Chromosome1 (Build37)
Map Location 132,796,849 - 132,797,426
singlet/doubletsinglet
Overlap genenone
Upstream geneThsd7b, Daf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24
Downstream geneIl20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534P10.T7 (MSMg01no534_p10.b1)MSMg01-534P10.TJ (MSMg01no534_p10.g1)
ACCAG602525AG602526
length735748
length of high quality
(start - end)		693 (43 - 735)486 (70 - 555)
definitionCHROMAT_FILE: MSMg01no534_p10.b1 PHD_FILE: MSMg01no534_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:38 2005CHROMAT_FILE: MSMg01no534_p10.g1 PHD_FILE: MSMg01no534_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTAGAGGCCTCCTTTGGATAGAAAAGAATAAAGGAAAAACTCACTATGG
AAAAAAAAAAACAAAACAGAGCAGATCTGAATCGTATGAAATACCGGAAC
TTGAAAAAGGATAAAATGATAGGATTAATAATATCTGACCTCAAATGTAT
GCCAAATGCTGACGACTCAGACAGTGTGAAGCTTGTGTGATGGCTGGACA
GACAGACACATGGGACAGACTAGAACTCCTGGACATGCATAGACAATTCA
TTTTCAACATACACGAGGCATAGAAATGGTGCTACAATATTGGTGGCATA
GGTCTTTAATTCCAGTGTCTGAGGCCAGAGGTTAGCCAATTTAATGTAGC
CTGAGCTACGATATGAGGTCCTATTTAGAAAGAAAAGAATGAAGGAAGGA
AGGAAGGAAGAAGAAAGAAAAATAAATAAATAAATAAATATTGATTGATT
GATTGATTGATTGATTGTCTATTCCAAGAACTGAGGAGGGTACAGAAGAA
CAGAAATGACCCCTATCCTGCTGTGGGGGATGGGAAGGGGACAATTGGTT
ATCCATGCAGGAATAAACTTTCGATTCATGCGTCATTCTATAAAATGCCA
ATAACAATGGACCATAGCTCTAAGTGTGCAACCTGCAACTGTGAACTTTC
TTAGAGGAAAGGTTTTGAAAACCTTTGTGGACTTC

TGCTGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGACCAACAAACACCTTAGTGAGACCCGGT
CTCAAAAACTTAAAAGGCTGGGGATGGAGCTCAGGGGCAATCTACTTGTT
GTGTAGCATGTGTAAGGCCCTGGGTTCAACCACACACACACACACACACA
CACACACACACACACACAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGA
GAGAGAGAGAGAGCAATCAAACCAAGCCAAAGAAGAAGAAAAAATTTAAC
TTAGCATCACTTTCTCAAAGGCATGATTGTTCACTAGAACTTTCCCCAAA
GATTAAAAAAAAACCACACTACACCTGCTCTGCCCAGCTGAGTACCCACT
AGCTCCATGGAGCTACAAAGACCTAAAATGTAGCTAGTTCACCTCAGTGA
GGGACCAAACTTTTAAGTTTGTTTCATTTTAACTAATCAAAATTAAAGTT
GCTAAAAGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTACAGNGNCCCATATATCTTCTTCTTAATAGAATGTTTTT
TTATTTTGTTTTTATACCTTTTCCCTATAATCCTATTCTATTCTTTTTTT
TTCCTAGTGTTTGCGGTTTTTGATCTCACACATCTCTCTTGTTAATTATT
CTTACATATATTTTCCCCCTATCCTCTCACTTGCTCTTCATCTTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_p10.b1 MSMg01no534_p10.b1 CHROMAT_FILE:
MSMg01no534_p10.b1 PHD_FILE: MSMg01no534_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:38 2005
         (693 letters)



>mm_chr1_132796849_132797935
          Length = 1087

 Score = 1038 bits (537), Expect = 0.0
 Identities = 567/585 (96%), Gaps = 16/585 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagaggcctcctttggatagaaaagaataaaggaaaaactcactatggaaaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gaattctagaggcctcctttggatagaaaagaataaaggaaaaactcactatggaaaaaa 519

                                                                       
Query: 65  aaaaacaaaacagagcagatctgaatcgtatgaaataccggaacttgaaaaaggataaaa 124
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ------aaaacagagcagatctgaatcgtatgaaataccggaacttgaaaaaggataaaa 465

                                                                       
Query: 125 tgataggattaataatatctgacctcaaatgtatgccaaatgctgacgactcagacagtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgataggattaataatatctgacctcaaatgtatgccaaatgctgacgactcagacagtg 405

                                                                       
Query: 185 tgaagcttgtgtgatggctggacagacagacacatgggacagactagaactcctggacat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tgaagcttgtgtgatggctggacagacagacacatgggacagactagaactcctggacat 345

                                                                       
Query: 245 gcatagacaattcattttcaacatacacgaggcatagaaatggtgctacaatattggtgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gcatagacaattcattttcaacatacacgaggcatagaaatggtgctacaatattggtgg 285

                                                                       
Query: 305 cataggtctttaattccagtgtctgaggccagaggttagccaatttaatgtagcctgagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 cataggtctttaattccagtgtctgaggccagaggttagccaatttaatgtagcctgagc 225

                                                                       
Query: 365 tacgatatgaggtcctatttagaaagaaaagaatgaaggaaggaag---gaaggaagaag 421
           ||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||| 
Sbjct: 224 tacgatatgaggtcctatttagaaagaaaagaatgaaggaaggaagaaagaagaaagaa- 166

                                                                       
Query: 422 aaagaaa------aataaataaataaataaatattgattgattgattgattgattgattg 475
           ||| |||      |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 aaataaataaataaataaataaataaataaatattgattgattgattgattgattgattg 106

                                                                       
Query: 476 tctattccaagaactgaggagggtacagaagaacagaaatgacccctatcctgctgtggg 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 tctattccaagaactgaggagggtacagaagaacagaaatgacccctatcctgctgtggg 46

                                                        
Query: 536 ggatgggaaggggacaattggttatccatgcaggaataaactttc 580
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  ggatgggaaggggacaattggttatccatgcaggaataaactttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1087
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1077
Effective search space:   735591
Effective search space used:   735591
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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