GTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCGGAACTCCAATGTGAAGATTAGTAACCCAGTTTTTGACTTTATTC
TCCTGTCTGCATTTGGAATTTCTGTTAAGGTCTAAGGTACAAATTGCAAT
CCTGTCCATGCACTTGTCTCTAACACACCAGTGGGTCCTATCTAAGGAAG
CCTTTGACCTTGAGTCGTGAAACTGTCTCTCTGACCTTGGGGTGCACATC
CTGTCTGAGGTATGTGACAGTTTCCTCTCTTTGTATGTGTACAGGTTATC
TTTCTTTTCTTTTTGTACGTGTCTCTGTATTTTCTTTTCTGTTTTTAGAA
AGACACTTATCACATTGGATTAGTCCCTACCTAACTTCAATATGACCCCA
TTTTAACTAATTAAAAATGCAGAGCCCATACTTGCAAACAATGTAACATT
CATAGGTGTTAGGAATTAGGAATTCATTGTATCTTTTCTGAGGACAAAGT
TATACACTTATTATTAAATAAAACTAAATATTAAATAGAATCACACATAG
ATGCTACAATTATTTTTTGATATAAAAATAATTATTTTGTATGGCTTAAC
CAAAATAGTAATTGAAATATGTGATTTTAAAGTGAACTGAGTATTACTGG
TGCTATAGGTTGCTCTGGTCACTTCCTGAGAAAGTGACACATGCCTGGGC
TCCTGATGCTGGCCATAGTGTGTGAGCAGAGTAAACACCATGTGCCTCAA
GGCATCTGCCCAGAT

NGCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTCTCTAAGACTTTTACC
ATGAAGGAGTGTTGAATTATGCCTAAGGCTTTTCAGCATCTAATGAGATG
ATCACATGATTTTTGCCTTTCAGTTTGTTTATATAGTGAATTACATTGAT
TGATATTTGTGTATTGTTCCATCCATGCATCCCTAGGATGAAGCCTGCTT
GATCATGGTGAATGATGTTTTTGATGTGTTCTTGAATTCAGTTTGCAAGA
ATTTTATTGAGTATTTTTGCATAGATGTTCATAAGTGAAATTGGTCTGAA
GTTCTCTTTCTTTGTTGAGTCTTTGGATAGGGTAGCTGTGGTCTCAGAGA
ATGAATTAGGTAGTGTTCCTTCTGTTTCTATTTTGTGTAATAGTTTGAGA
ATTGTTGGTATTATCTCTTTGAAAGTCTGGTAGAATTCTACCCTAAAACT
ATCTGACTCTGGGTTTTGTTGTTGTGGTTGTTGTTTTGTTTTGGTTGGTT
GGTTGGTTGGNTNNNNNNNNNNNNNNNNNNNNNTNNTNTNNNNTNNTTTT
TTTTNTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTNTTTTTTTTTTTNNTTTTTTTTTTTTTTNTTTNTTTTTTTTT
TTTTTTTTTTTTTTTNTTTTTTTTTNTTTTTTNTTTTTTTTTTTTNTTTT
TTNT

Query= MSMg01no535_d14.b1 MSMg01no535_d14.b1 CHROMAT_FILE:
MSMg01no535_d14.b1 PHD_FILE: MSMg01no535_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:58 2005
         (669 letters)



>mm_chr1_108765772_108766840
          Length = 1069

 Score = 1270 bits (657), Expect = 0.0
 Identities = 663/665 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcggaactccaatgtgaagattagtaacccagtttttgactttattctcctgtctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcggaactccaatgtgaagattagtaacccagtttttgactttattctcctgtctg 264

                                                                       
Query: 65  catttggaatttctgttaaggtctaaggtacaaattgcaatcctgtccatgcacttgtct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catttggaatttctgttaaggtctaaggtacaaattgcaatcctgtccatgcacttgtct 324

                                                                       
Query: 125 ctaacacaccagtgggtcctatctaaggaagcctttgaccttgagtcgtgaaactgtctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctaacacaccagtgggtcctatctaaggaagcctttgaccttgagtcgtgaaactgtctc 384

                                                                       
Query: 185 tctgaccttggggtgcacatcctgtctgaggtatgtgacagtttcctctctttgtatgtg 244
           |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 385 tctgaccttggggtgcacatcctgtccgaggtatgtgacggtttcctctctttgtatgtg 444

                                                                       
Query: 245 tacaggttatctttcttttctttttgtacgtgtctctgtattttcttttctgtttttaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tacaggttatctttcttttctttttgtacgtgtctctgtattttcttttctgtttttaga 504

                                                                       
Query: 305 aagacacttatcacattggattagtccctacctaacttcaatatgaccccattttaacta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagacacttatcacattggattagtccctacctaacttcaatatgaccccattttaacta 564

                                                                       
Query: 365 attaaaaatgcagagcccatacttgcaaacaatgtaacattcataggtgttaggaattag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attaaaaatgcagagcccatacttgcaaacaatgtaacattcataggtgttaggaattag 624

                                                                       
Query: 425 gaattcattgtatcttttctgaggacaaagttatacacttattattaaataaaactaaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaattcattgtatcttttctgaggacaaagttatacacttattattaaataaaactaaat 684

                                                                       
Query: 485 attaaatagaatcacacatagatgctacaattattttttgatataaaaataattattttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attaaatagaatcacacatagatgctacaattattttttgatataaaaataattattttg 744

                                                                       
Query: 545 tatggcttaaccaaaatagtaattgaaatatgtgattttaaagtgaactgagtattactg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tatggcttaaccaaaatagtaattgaaatatgtgattttaaagtgaactgagtattactg 804

                                                                       
Query: 605 gtgctataggttgctctggtcacttcctgagaaagtgacacatgcctgggctcctgatgc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gtgctataggttgctctggtcacttcctgagaaagtgacacatgcctgggctcctgatgc 864

                
Query: 665 tggcc 669
           |||||
Sbjct: 865 tggcc 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)