BAC Information

Click to search

BAC

Clone NameMSMg01-535D21
Chromosome1 (Build37)
Map Location 95,077,200 - 95,240,360
singlet/doubletdoublet
Overlap geneE030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7
Upstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik
Downstream geneTmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535D21.T7 (MSMg01no535_d21.b1)MSMg01-535D21.TJ (MSMg01no535_d21.g1)
ACCAG602737AG602738
length766767
length of high quality
(start - end)		657 (48 - 704)578 (78 - 655)
definitionCHROMAT_FILE: MSMg01no535_d21.b1 PHD_FILE: MSMg01no535_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:00 2005CHROMAT_FILE: MSMg01no535_d21.g1 PHD_FILE: MSMg01no535_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,077,200 - 95,077,852)(95,239,783 - 95,240,360)
sequence
NGGACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCG
CGGAATTCATCCCTACTTGCAGGCCAAATTGTAGGCAGGCTCCCTGATGC
CCAGCTGCACTTCTGATTCCATTCTGCAGGGGTCTGATGACCCCTTTGTG
TCGTAAGGGTCTGTCTAATCTGTCTCCTAATGCCCCAGGCTAGCACTGGG
CACTGGGAAAGGACAGAGAAACACCACTGCATAAAGCAACTTCTCTCTGT
GGGCAGGGTCCTGCCACCCTGAAACAGCAGTCCCACTACGTGCAGACATG
ATGGGTGGTACCCAGTGTCCCCCACACATGCTTTAATTGTTAGGGGCTTG
ACCTGGCCATGAATAAGTGGGGTTAGAGCTACTTACCAAAGGCAATAGGG
ATAGGAGGGTGCTTGGTTACAGGAGAGGAAGTGAATTTCCTCGTGGACTG
TTCCAGTTGTTTGGGTAGAGCCCTGGCCTCATCTGAATGCTATACCCACA
GGGCTGCGGGAGCCACCAGCTACTACGTCCCATGCACGGGAGGAGAGTGA
ACTCCTGCAAGAGGAGCTGACACGATTGGAGGACCTGTTGGCCCAGGCGG
ATGCTGAGCGGGAAGAGCTGGCCAACAGGTGTCACATGGTCAGCCAGAGG
GTGAGTGTGCAGCTGGTACCCACAGGCCAGTGTGCATAGCCTAGCTCTTA
TCAGAGATCATCTATCAAGACTGGTGATCATTGTTGTGGGCCCATCAGCC
AGTCTCAGGACACTGA

TTCTCCATGAAGNTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCGATCCCGCAAGTGGCCGTGACC
GCCCAGCCCGAAGCTCGCCGCTCCCCGGTCACCCACAGGGGCCGCTCACC
CTCCATCATCTCCTGCGACTGTTGCTGCCCCGCGCCGCGCTCTGCCGCCA
TATTGGCTGCTCTTTCCCTTTCCGGAATCTGTCGCCTCAGGCCATGGGCC
AATCAGGATTCCAGGTCCAATAGGCCAGCCAATGGAACAAAGTATAGAAG
CGCGAGCTGACAATGCTTGCGCGGGCGCAGTGTTTCATGGGGATTGTAGT
TCCCACAGGCTCCGGCTCCACCTGGGTTAGGGGTTTGATGAATGAGTAGA
GTCTAGGCGAGCACGAAGAAAGCAGACATCCCGGAAAGTCTTTAGGCAGC
ATGGGAGACACTTCAAGCTTGCGGATTCGCTCAAGTCACTATGCCAACTT
CGGAGGCGTAGAGGTACTGCGGACAGGAGAGTTCTACAGGCCACAGGTGA
AGCCGACTAGACTTGCACCCCCGACTTCGGGAGCCTCACTTCACGGTGAG
CCGGTAGGCGAGGGAAACCAGTTTATTCTGCGCCTGCGTGCTGATACACT
GGTGCCACAGGCCACCTTTAGGGGATGCTTGGAGAAAGCGGGAGGGGCCG
CGGTCCGGTCCTGGGGCTCACGTTTGCGGCCTCCAGCCCACGGCGAGCCA
CTGTGTCGTCTGCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_d21.b1 MSMg01no535_d21.b1 CHROMAT_FILE:
MSMg01no535_d21.b1 PHD_FILE: MSMg01no535_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:00 2005
         (657 letters)



>mm_chr1_95076996_95078052
          Length = 1057

 Score = 1208 bits (625), Expect = 0.0
 Identities = 646/653 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcatccctacttgcaggccaaattgtaggcaggctccctgatgcccagctgcact 64
           ||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcatccctacatggaggccaaatcgtaggcaggctccctgatgcccagctgcact 264

                                                                       
Query: 65  tctgattccattctgcaggggtctgatgacccctttgtgtcgtaagggtctgtctaatct 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgattccattctgcaggagtctgatgacccctttgtgtcgtaagggtctgtctaatct 324

                                                                       
Query: 125 gtctcctaatgccccaggctagcactgggcactgggaaaggacagagaaacaccactgca 184
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtctcctaatgccacaggctagcactgggcactgggaaaggacagagaaacaccactgca 384

                                                                       
Query: 185 taaagcaacttctctctgtgggcagggtcctgccaccctgaaacagcagtcccactacgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaagcaacttctctctgtgggcagggtcctgccaccctgaaacagcagtcccactacgt 444

                                                                       
Query: 245 gcagacatgatgggtggtacccagtgtcccccacacatgctttaattgttaggggcttga 304
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagacatgatgggcggtacccagtgtcccccacacatgctttaattgttaggggcttga 504

                                                                       
Query: 305 cctggccatgaataagtggggttagagctacttaccaaaggcaatagggataggagggtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctggccatgaataagtggggttagagctacttaccaaaggcaatagggataggagggtg 564

                                                                       
Query: 365 cttggttacaggagaggaagtgaatttcctcgtggactgttccagttgtttgggtagagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttggttacaggagaggaagtgaatttcctcgtggactgttccagttgtttgggtagagc 624

                                                                       
Query: 425 cctggcctcatctgaatgctatacccacagggctgcgggagccaccagctactacgtccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctggcctcatctgaatgctatacccacagggctgcgggagccaccagctactacgtccc 684

                                                                       
Query: 485 atgcacgggaggagagtgaactcctgcaagaggagctgacacgattggaggacctgttgg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgcacgggaggagagtgaactcctgcaagaggagctgacacgattggaggacctgttgg 744

                                                                       
Query: 545 cccaggcggatgctgagcgggaagagctggccaacaggtgtcacatggtcagccagaggg 604
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 745 cccaggcggatgctgagcgggaagagctggccagcaggtgtcacatggtcagccagaggg 804

                                                                
Query: 605 tgagtgtgcagctggtacccacaggccagtgtgcatagcctagctcttatcag 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgagtgtgcagctggtacccacaggccagtgtgcatagcctagctcttatcag 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no535_d21.g1 MSMg01no535_d21.g1 CHROMAT_FILE:
MSMg01no535_d21.g1 PHD_FILE: MSMg01no535_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:00 2005
         (578 letters)



>mm_chr1_95239583_95240560
          Length = 978

 Score = 1102 bits (570), Expect = 0.0
 Identities = 576/578 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgatcccgcaagtggccgtgaccgcccagcccgaagctcgccgctccccggtcacccaca 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 cgatcccgcaagaggccgtgaccgcccagcccgaagctcgccgctccccggtcacccaca 719

                                                                       
Query: 61  ggggccgctcaccctccatcatctcctgcgactgttgctgccccgcgccgcgctctgccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ggggccgctcaccctccatcatctcctgcgactgttgctgccccgcgccgcgctctgccg 659

                                                                       
Query: 121 ccatattggctgctctttccctttccggaatctgtcgcctcaggccatgggccaatcagg 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 658 ccatattggctgctctttccctttccggaatctgtcgccttaggccatgggccaatcagg 599

                                                                       
Query: 181 attccaggtccaataggccagccaatggaacaaagtatagaagcgcgagctgacaatgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 attccaggtccaataggccagccaatggaacaaagtatagaagcgcgagctgacaatgct 539

                                                                       
Query: 241 tgcgcgggcgcagtgtttcatggggattgtagttcccacaggctccggctccacctgggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tgcgcgggcgcagtgtttcatggggattgtagttcccacaggctccggctccacctgggt 479

                                                                       
Query: 301 taggggtttgatgaatgagtagagtctaggcgagcacgaagaaagcagacatcccggaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 taggggtttgatgaatgagtagagtctaggcgagcacgaagaaagcagacatcccggaaa 419

                                                                       
Query: 361 gtctttaggcagcatgggagacacttcaagcttgcggattcgctcaagtcactatgccaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gtctttaggcagcatgggagacacttcaagcttgcggattcgctcaagtcactatgccaa 359

                                                                       
Query: 421 cttcggaggcgtagaggtactgcggacaggagagttctacaggccacaggtgaagccgac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cttcggaggcgtagaggtactgcggacaggagagttctacaggccacaggtgaagccgac 299

                                                                       
Query: 481 tagacttgcacccccgacttcgggagcctcacttcacggtgagccggtaggcgagggaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tagacttgcacccccgacttcgggagcctcacttcacggtgagccggtaggcgagggaaa 239

                                                 
Query: 541 ccagtttattctgcgcctgcgtgctgatacactggtgc 578
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ccagtttattctgcgcctgcgtgctgatacactggtgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |