XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTCTGGAATATTTAGGAAACTATGTAACAAGCTAGTTTATATTTAG
ACTATATTTAACATATTTTGTTTATTTTGCTTGGAATTTCAATGATCATA
ACTTAATCTAAATGACCCCAAATCTACACATGGATACATATACACACAAA
ATGCATTTTCTTGTATAGACTCATTTTTTAACAGTTCTATTCAGCAATTC
ATAGAGTGTTTGGGAGTGCTCTGAAAGCAAACCACCTTAGGAAGATCTTT
AAAAAAAAACAATCCATCACTTTCTTTGAAAATATGTGTTATGTTTACAA
AAGTTATGCTATTTTTTTCTTGTTGTGAGTAACTAGGCATTGTTGTGATT
CATGTATGGAACTTTTATATGCTATCTATTCCTCTTCTGTCTCTCAGTGG
TATAGATGAATAAGGTAGAGGAAAGCCAAAGCCCTTTCATAATTACAAAC
AAAACTGTTAGTAATGGTACAACATTGGAAAGACAGGATTGAACTTGACT
ATTCTGATGATAGGCTACAAATTGAGACCATCTGTTGTGCTATAGAACTT
CAGTCCTTGTGGGTAGGACTACACCAAGTATTTTTAAGTATTTGGCATTT
GAATTGCTATAGAAAGTACCTGTCAGAGAATGTGGAGAATAGATATAGAA
TTTTCTGAACCATTGTGCATTTTTAGATGTATGTACTTTACCTTCCCCAT
TGCTGTGATAAAATATCTGACAAAAACCAN

NNNCTTCCCAAGAGGGAGNNNNNNNNNGNNNNNNNNNNCCTATGACANTG
GGTAGGCCTTGGGGGNCCNCCTGGCCGTGTGGGCTTTATTGATCTATANN
AGGATCCCCAAGATCAAAAGCTGCCAAGGGCCCAGTTTAGGGTGGGGGCC
CCAAAATGGGGAAACCCCGGTTAAAAGGGCAAAAAAAATTTCTCTTTTAA
AAACCCTTTTTGGCCCCTGGGTTTTTTTTGGGGGGGGCCCTTCCCTTTTT
TTTTGGGGGGGGAGGAAGTCCCCCCCGGGGGTTTTTTTTTTTTTATAAAA
AAAAAAACCCCCCCCCCCCCTTTTTTTTAACCCCTTTTTTTTTTTGGGCC
CCCCCAAAAAAAAAATTCTTTTTTAGGGGGGGGGGGGGGTCTTCCACCAA
AAAAAAAAAAAAAGGGGGGGGGTGGGTGCAAAAAAAAAAAAGAAANCACC
CCCCCCCCCCCTTTTTTTTTTGGGGGGGGGCGCCGGGGNNCGGCTGGAAA
AAAACAAAAAACTCCCTCTTTTTTAAAAAAAGAGGTGGGGGGGGGGGCCC
CCCCCCCCCCCCCCCTCCTTTTTTGTTGGGGGCCCCCCCCCCCCCCTTTT
TTTTTTTTTTTNTTTTTTTAAAAAAAAAAAAACACTCCTCCCCCCNACGC
GGGGGGAGGAGAAGATAACTACCCACACCCCTCCTCCC

Query= MSMg01no535_f05.b1 MSMg01no535_f05.b1 CHROMAT_FILE:
MSMg01no535_f05.b1 PHD_FILE: MSMg01no535_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:06 2005
         (715 letters)



>mm_chr1_125719240_125720359
          Length = 1120

 Score = 1218 bits (630), Expect = 0.0
 Identities = 694/718 (96%), Gaps = 9/718 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttctggaatatttaggaa-----actatgtaacaagctagtttatatttagac 59
           |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||
Sbjct: 920 gaattctttctggaatatttaggaaactctactatgtaacaagctagtttatatttagac 861

                                                                       
Query: 60  tatatttaacatattttgtttattttgcttggaatttcaatgatcataacttaatctaaa 119
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tatatttaacgtattttgtttattttgcttggaatttcaatgatcataacttaatctaaa 801

                                                                       
Query: 120 tgaccccaaatctacacatggatacatatacacacaaaatgcattttcttgtatagactc 179
           |||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 800 tgactccaaatctacacatggatacatatacacacaaaatgcatttt-ttgcatagactc 742

                                                                       
Query: 180 a-ttttttaacagttctattcagcaattcatagagtgtttgggagtgctctgaaagcaaa 238
           | ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 741 atttttttaacagttctattcagcatttcatagagtgtttgggaatgctctgaaagcaaa 682

                                                                       
Query: 239 ccaccttaggaagatctttaaaaaaaaacaatccatcactttctttgaaaatatgtgtta 298
           |||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 ccaccttaggaagatcttt-taaaaaaacaatccattactttctttgaaaatatgtgtta 623

                                                                       
Query: 299 tgtttacaaaagttatgct-atttttttcttgttgtgagtaactaggcattgttgtgatt 357
           || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgcttacaaaagttatgctgttttttttcttgttgtgagtaactaggcattgttgtgatt 563

                                                                       
Query: 358 catgtatggaacttttatatgctatctattcctcttctgtctctcagtggtatagatgaa 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 562 catgtatggaacttttatatgctatctattcctcttctgtctctcagtggtatagataaa 503

                                                                       
Query: 418 taaggtagaggaaagccaaagccctttcataattacaaacaaaactgttagtaatggtac 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 taaggtagaggaaagccaaagccctttcataattacaaacaaaactgttagtaatggtac 443

                                                                       
Query: 478 aacattggaaagacaggattgaacttgactattctgatgataggctacaaattgagacca 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aacattggaaagacaggattgaacttgactattctgatgataggctacaaattgagacca 383

                                                                       
Query: 538 tctgttgtgctatagaacttcagtccttgtgggtaggactacaccaagtatttttaagta 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tctgttgtgctatagaacttcagtccttgtgggtaggactacaccaagtatttttaagta 323

                                                                       
Query: 598 tttggcatttgaattgctatagaaagtacctgtcagagaatgtggagaatagatatagaa 657
           |||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 322 tttggcatttgaattgctgtagaaaatacctgtcagagaatgtggagaaaagatatagaa 263

                                                                     
Query: 658 ttttctgaaccattgtgcatttttagatgtatgtactttaccttccccattgctgtga 715
           || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 262 ttgtctgaaccattgtgcatttttagatgtatgtgctttaccttccccattgctgtga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1120
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1110
Effective search space:   782550
Effective search space used:   782550
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)