Query= MSMg01no535_o01.b1 MSMg01no535_o01.b1 CHROMAT_FILE:
MSMg01no535_o01.b1 PHD_FILE: MSMg01no535_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:49 2005
(662 letters)
>mm_chr1_80417321_80418385
Length = 1065
Score = 1013 bits (524), Expect = 0.0
Identities = 554/566 (97%), Gaps = 5/566 (0%)
Strand = Plus / Minus
Query: 5 gaattcagcatttaaatacatagcagcaccagaccaaccccaacataagaagacactttg 64
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 564 gaattcagcatttaaatacatagcagcaccagaccaaccccaacgtaagaagacactttg 505
Query: 65 taatctttcagctttaacggatcacacatagacactacacaacatatcctgcaaatacaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taatctttcagctttaacggatcacacatagacactacacaacatatcctgcaaatacaa 445
Query: 125 cctgtgagcctcctttca---cttctgcgaagcaacctcactcgtgagtgaatgctgaag 181
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctgtgagcctcctttcacttcttctgcgaagcaacctcactcgtgagtgaatgctgaag 385
Query: 182 tagattctatggaaagctggactttttgtttggtgttgcaagttaaccttttacaaagtt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagattctatggaaagctggactttttgtttggtgttgcaagttaaccttttacaaagtt 325
Query: 242 ctggtgatggcttttagtattaaaatatgtaattaactgaaaaagaatggcagtttgtta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctggtgatggcttttagtattaaaatatgtaattaactgaaaaagaatggcagtttgtta 265
Query: 302 gaatgccactgaggtagagtatttaaaagccagaaactttcccccaccacacacatcaga 361
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taatgccattgaggtagagtatttaaaagccagaaactttcccccaccacacacatcaga 205
Query: 362 ctttgcagtgaaactctgctacttttcccatataaggccagaattcatttttcaaccacc 421
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctttgcagtgaaa--ctgctacttttcccatataaggccagaattcatttttcaaccacc 147
Query: 422 aagagttctatctgccttggcagcttgctttaactatacaatgtgctagcagtaaaggta 481
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 aagagttctatctgccttagcagcttgctttaactatacaatgtgctagcagtaaaggta 87
Query: 482 tgcaagtccaagtccccagggtattacagccttgaccttctttttcatttttatgttttt 541
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 86 tgcaagtccaagtccccagggcattacagccttgaccttcttttttatttttatgttttt 27
Query: 542 aaatggtgtggaaattattagaggat 567
|||||||| |||||||||||||||||
Sbjct: 26 aaatggtgcggaaattattagaggat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1065
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1055
Effective search space: 687860
Effective search space used: 687860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_o01.g1 MSMg01no535_o01.g1 CHROMAT_FILE:
MSMg01no535_o01.g1 PHD_FILE: MSMg01no535_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:49 2005
(647 letters)
>mm_chr1_80220794_80221843
Length = 1050
Score = 1195 bits (618), Expect = 0.0
Identities = 641/650 (98%), Gaps = 3/650 (0%)
Strand = Plus / Plus
Query: 1 tcagagctcactgggtacatggccgagtttacctggccagttccaggtcaacgagagacc 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tcagagctcactgggtacatggccgagtttacctggccagttctaggtcaacgagagacc 260
Query: 61 tgtgaaaaggtagacagtccctgagcaacaacacacaaggttgctctttaggtttcacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgaaaaggtagacagtccctgagcaacaacacacaaggttgctctttaggtttcacac 320
Query: 121 atatatcatacatgcacacatgtatggtgcacacatacacaccacacacatgaacgtctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatatcatacatgcacacatgtatggtgcacacatacacaccacacacatgaacgtctc 380
Query: 181 aaacagcccttcatttggctacttgagggtttgtgagtctggaatgagttataatctcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacagcccttcatttggctacttgagggtttgtgagtctggaatgagttataatctcta 440
Query: 241 ataataaacatgggggggg---acaagaaatggagaataaaagcagaggcacgctctcct 297
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 441 ataataaacatgggggggggggacaagaaatggagaataaaagcagaggcacactctcct 500
Query: 298 aataaattggggaaaaaaatgcatccttgggaaatactcagaaaagcctttgttagctct 357
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtaaattggggggaaaaatgcatccttgggaaatactcagaaaagcctttgttagctct 560
Query: 358 ccagatcaagccagctttggatcttaccccaggtgggctggaagatggaggatggtcaga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagatcaagccagctttggatcttaccccaggtgggctggaagatggaggatggtcaga 620
Query: 418 cttggtttacatctgatttgatcaatgagtgtttctcctgagagctggccaagtggtaag 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttggtttacatctgatttgatcaatgagtgtttctcctgagagctggccaagtggtaag 680
Query: 478 agctgagccacacccagggctggctgattcctaagcagagctgcctttgcaacaggtcct 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agctgagccacacccagggctggctgattcctaagcagagctgcctttgcaacaggtcct 740
Query: 538 ggccaggtttcctgcagctactcagagcagcagcactccctccctcctgtgagactgcca 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggccaggtttcctgcagctactcagagcagcagcactccctccctcctgtgagactgcca 800
Query: 598 tgacctcctgaggcacagctatgacagttggcacttggcacttatgaggt 647
|||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 801 tgacctcctgaggcacagctgtgacagttggcacttggcacttatgaggt 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1050
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1040
Effective search space: 662480
Effective search space used: 662480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
