BAC Information

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BAC

Clone NameMSMg01-536E02
Chromosome1 (Build37)
Map Location 96,400,192 - 96,400,690
singlet/doubletsinglet
Overlap genenone
Upstream geneSept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025
Downstream geneLOC100040685, LOC383603, Tmem157, LOC100041686
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536E02.T7 (MSMg01no536_e02.b1)MSMg01-536E02.TJ (MSMg01no536_e02.g1)
ACCAG603512AG603513
length746746
length of high quality
(start - end)
638 (51 - 688)502 (84 - 585)
definitionCHROMAT_FILE: MSMg01no536_e02.b1 PHD_FILE: MSMg01no536_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:18 2005CHROMAT_FILE: MSMg01no536_e02.g1 PHD_FILE: MSMg01no536_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTGCACTTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTTTGTTCTGAGCCCCATTTTTAATGGGGTTATTTG
ATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGT
CCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGG
CCTTTTTGTCTTACTGATGGTGACTTTTGCCTTGCAGAAGCTTTGGAGTT
TCATGAGGTCCCATTTGTCAATTCTCAATCTTACAGCACAAGCCATTGCT
GTTCTATTCAGGAATTTTTCCCCTGTGCCCATATCTTCCAGGCTTTCCCC
CACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCT
TGATCTACTTAGGTTGGACCTTAGTACAAGGAGATAGGTATAGATCAATT
AGAATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAA
AATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCA
AGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTATATTCCAT
TGGTCTACTTGTCTGTCCTTATACCAGTACCAAGCCGTTTTTATCACAAT
TGCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTC
TTTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATT
TTTTTTTTCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTAAATGAATAGCTT
GGAATTCAAATTCCAATCTCTATGAAGGCACGGGACATCTGAACATGTCT
TTTTCATTTATTTATTGTTTGTGGTGAGGATTAATATATAATTTTCTTTA
TCACTGTCAGTCATGCTTTGTCTAGAACAGAAAACCAAAGTGTGCTAAGC
AGCCACCTAGTAAAATGGTGGACTGCTTTAATGAAGAGAGGAAAGGAGAG
AAGGCCCACAAAGAAGCTTTGGATGTAGGTGTTGAATACAATTATTTTGT
AAACGTTTGGAATGGTTCCCAGTTTGGTTAATGAGGTAGCCATTTGCCTG
ACTGAATGGTCTTTGAAAAACCTTCTGTTCTATAAAAGACATTTCCTTGC
TGCTGCCAGCTGATGTCTATCAGCGAGGACATTTGGCGACAATAACCTAG
TCTGGATGGCTGGAAGGAGAGTGCTTCTTTAATCATCTAAATTGATTTTC
TTAACTTTCTCATCAGTCTTTATAAAAGACGGACACAGCAGAGGACTGAA
GGCTGGTCCTCACAAGAATTCCCTGTCTATTCTACTGTAAACATTTTCCA
ATCAGCTTGTTAATAATATTTAGACTTTTATCAATCATTCTTTTAACCAA
GCACACGAACTGCCAAGACTCAGAGCCAACGTCTTTCATCTGGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_e02.g1 MSMg01no536_e02.g1 CHROMAT_FILE:
MSMg01no536_e02.g1 PHD_FILE: MSMg01no536_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:18 2005
         (502 letters)



>mm_chr1_96399992_96400893
          Length = 902

 Score =  957 bits (495), Expect = 0.0
 Identities = 498/499 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttaaatgaatagcttggaattcaaattccaatctctatgaaggcacgggacatctgaa 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 atttaaatgaatagcttggaattcaaatcccaatctctatgaaggcacgggacatctgaa 260

                                                                       
Query: 61  catgtctttttcatttatttattgtttgtggtgaggattaatatataattttctttatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtctttttcatttatttattgtttgtggtgaggattaatatataattttctttatca 320

                                                                       
Query: 121 ctgtcagtcatgctttgtctagaacagaaaaccaaagtgtgctaagcagccacctagtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtcagtcatgctttgtctagaacagaaaaccaaagtgtgctaagcagccacctagtaa 380

                                                                       
Query: 181 aatggtggactgctttaatgaagagaggaaaggagagaaggcccacaaagaagctttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatggtggactgctttaatgaagagaggaaaggagagaaggcccacaaagaagctttgga 440

                                                                       
Query: 241 tgtaggtgttgaatacaattattttgtaaacgtttggaatggttcccagtttggttaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaggtgttgaatacaattattttgtaaacgtttggaatggttcccagtttggttaatg 500

                                                                       
Query: 301 aggtagccatttgcctgactgaatggtctttgaaaaaccttctgttctataaaagacatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtagccatttgcctgactgaatggtctttgaaaaaccttctgttctataaaagacatt 560

                                                                       
Query: 361 tccttgctgctgccagctgatgtctatcagcgaggacatttggcgacaataacctagtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccttgctgctgccagctgatgtctatcagcgaggacatttggcgacaataacctagtct 620

                                                                       
Query: 421 ggatggctggaaggagagtgcttctttaatcatctaaattgattttcttaactttctcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggatggctggaaggagagtgcttctttaatcatctaaattgattttcttaactttctcat 680

                              
Query: 481 cagtctttataaaagacgg 499
           |||||||||||||||||||
Sbjct: 681 cagtctttataaaagacgg 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)