Query= MSMg01no536_j03.b1 MSMg01no536_j03.b1 CHROMAT_FILE:
MSMg01no536_j03.b1 PHD_FILE: MSMg01no536_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:43 2005
(590 letters)
>mm_chr1_101213139_101214130
Length = 992
Score = 944 bits (488), Expect = 0.0
Identities = 564/592 (95%), Gaps = 10/592 (1%)
Strand = Plus / Plus
Query: 5 gaattctcgattt---cattagttgcagcatggttattagacacttcagtgttcaagtgc 61
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattctcgat--aagcattagttgcagcatggttattagacacttcaatgttcaagtgc 262
Query: 62 accttccattttaagctagataacctgaattcattcacaagaaaccaggtaaagcagatt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 263 accttccattttaagctagataacctgaattcattcacaagaaaccaggtaaagcagttt 322
Query: 122 atggtagtgtgcaccttctgccccaatgctgtggagacagaaaaatgcagatctttgggg 181
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 323 atggtagtgtgcaccttctgccctaatgctgtggagacagaaaaatgaagatctttgggg 382
Query: 182 ctccatggtctgcaaatcctgcataagagcaagtcacaggcgtaagacatctcataaaac 241
| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 383 caccatggtctgccaatcctgcataagagcaagtcacaggcgcaagacatctcataaag- 441
Query: 242 aaatgagcaataccttaggaaaataacccccaactgatttctgc-cttctatcaactggc 300
||||||||||||||| ||||||| |||||||||||||||||| | |||||||||||||||
Sbjct: 442 aaatgagcaatacctaaggaaaagaacccccaactgatttct-ctcttctatcaactggc 500
Query: 301 aacttcctcccaaaataagattcgtctttcaaagatgggcacacacacaca--tatttga 358
|||||||||||||| ||||||| ||||| |||||||||||||||||||||| |||||||
Sbjct: 501 aacttcctcccaaagtaagatttgtcttccaaagatgggcacacacacacacatatttga 560
Query: 359 atatgccccccatcatcacacaaacaagcacatgcatgcacttttcccttcccaaatgtg 418
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 atatgccccctatcatcacccaaacaagcacatgcatgcacttttcccttcccaagtgtg 620
Query: 419 agccacaattatgacggtacaagggcaagagagtacagagagttttgtgctaatctcatt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agccacaattatgacggtacaagggcaagagagtacagagagttttgtgctaatctcatt 680
Query: 479 acagaatagcctgactgctcttacactcatataaattgggcatgtcatttcacaaaaggt 538
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 acagaatagcctgactgctcttacactcatgtaaattgggcatgtcatttcacaaaaggt 740
Query: 539 aaaaagagcctcagtatgatttacgtttatggatttcctctgaatgctagaa 590
||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 741 aaaaagagcctcagtatgatttatgtttatggatttcctctgaatgctagaa 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 992
Length adjustment: 10
Effective length of query: 580
Effective length of database: 982
Effective search space: 569560
Effective search space used: 569560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_j03.g1 MSMg01no536_j03.g1 CHROMAT_FILE:
MSMg01no536_j03.g1 PHD_FILE: MSMg01no536_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:43 2005
(618 letters)
>mm_chr1_101345229_101346244
Length = 1016
Score = 1091 bits (564), Expect = 0.0
Identities = 589/598 (98%), Gaps = 2/598 (0%)
Strand = Plus / Minus
Query: 21 aaagcaggtgtggccttccgtgtaagaaaactgaggtgtagggatgaagacaggagtgtc 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 aaagcaggtgtggccttccgtgtaagaaaactgaggtgtagggatgaagacaggagtgtc 957
Query: 81 tctgaagttactggccatctagcctggctgaaatggcaagaccaaaactagggagaaaca 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 tctgaagttactggccatctagcctggctgaaatggcaagaccaaaactagggagaaaca 897
Query: 141 atgtctcaaagaaataacatggagaacaattcaggaagatattctatatctacttcttat 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 atgtctcaaagaaataacatggagaacaattcaggaagatattctatatctacttcttat 837
Query: 201 tctgtacacacatgcacacaggtgcatgatataaccacagggccaaacttttgaaaggat 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 tctgtacacacatgcacacaggtgcatgatataaccacagggccaaacttttgaaaggat 777
Query: 261 agattttaggacaacagcaaaagtcttttgctttgggacatattatgaaaaagagaccaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 agattttaggacaacagcaaaagtcttttgctttgggacatattatgaaaaagagaccaa 717
Query: 321 atattggctcttggggtataattattaaatgtaacaatgaatgcttgaactgtggaggtc 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 atattggctcttggggtataattattaaatgtaacaatgaatgcttgaactgtggaggtc 657
Query: 381 aaggggcacagcttaagaagagacagatgaataacactactacccagggctggacaaatt 440
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 656 aaggggcacagcttaagaagagacagatgaataacactactacccaggcctggacaaatt 597
Query: 441 ggtattggcagggaaggaacttggaataaaagctgcctttgtctctggagcctggaaaat 500
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 596 ggtattggcagggaaggaacttggaataaaaactgcctttgtctctggagcctggaaaat 537
Query: 501 aacccaagagaccacattcatttcctgagcaaaaactctcctgttattcttaagaaaact 560
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 536 aacccaagagaccacattcatttcccgagcaaaaactc--ctgttattcttaagaaaact 479
Query: 561 ttatctttgcaacttggcaaccgccatggtatatatttaaagacacaaacctatcact 618
||||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct: 478 ttatctttgcaacttggcagtcacaatggtatatatttaaagacacaaacctatcact 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1016
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1006
Effective search space: 611648
Effective search space used: 611648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
