Query= MSMg01no536_p19.b1 MSMg01no536_p19.b1 CHROMAT_FILE:
MSMg01no536_p19.b1 PHD_FILE: MSMg01no536_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:15 2005
(566 letters)
>mm_chr1_101946319_101947284
Length = 966
Score = 625 bits (323), Expect = 0.0
Identities = 335/339 (98%)
Strand = Plus / Plus
Query: 228 tcttttaatttttaaaatggtggtgataatgttatgtattttgtgttataactggcctca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tcttttaatttttaaaatggtggtgataatgttatgtattttgtgttataactggcctca 487
Query: 288 aataacatttacaattatttcagtaaaacacctttccttccaggaggaggttgtcaggta 347
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aataagatttgcaattatttcagtaaaacacctttccttccaggaggaggttgtcaggta 547
Query: 348 tcttacagttcacatgagcataaacttgtgggaaactggaacatcatgatgttattaact 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tcttacagttcacatgagcataaacttgtgggaaactggaacatcatgatgttattaact 607
Query: 408 tttaaatcttcaggtgtcataccctccagattcctttattcataaaattcagctaggcct 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tttaaatcttcaggtgtcataccctccagattcctttattcataaaattcagctaggcct 667
Query: 468 gatggtaggcagaggcacatccaaaagtatagtatttggtgtctatgaaaaattgtaatg 527
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 gatggtaggcagaagcacatccaaaagtatagtatttggtgcctatgaaaaattgtaatg 727
Query: 528 cctgggccatcactatattagaataatgtcaggggactt 566
|||||||||||||||||||||||||||||||||||||||
Sbjct: 728 cctgggccatcactatattagaataatgtcaggggactt 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_p19.g1 MSMg01no536_p19.g1 CHROMAT_FILE:
MSMg01no536_p19.g1 PHD_FILE: MSMg01no536_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:15 2005
(571 letters)
>mm_chr1_102067444_102068414
Length = 971
Score = 861 bits (445), Expect = 0.0
Identities = 466/473 (98%), Gaps = 1/473 (0%)
Strand = Plus / Minus
Query: 100 aaaa-ctggacactgttgctgaaccattgtccttgcctcaggccaggtggcacagtagct 158
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 aaaacctggacactgttgctgaaccattgtccttgcctcaggccaggtggcacagtagct 912
Query: 159 tttgatggtgggtcagtttctgatttgctgcccaatgcctggggttttcctagtaactgc 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 tttgatggtgggtcagtttctgatttgctgcccaatgcctggggttttcctagtaactgc 852
Query: 219 cttgcctggacttgccaagttcttggaaacagtttcctgaactgtcagtttaaaacctgt 278
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 851 cttgcctggacttgccaagttcttggaaacagtttcctgaactgtcagtttaaagcctgt 792
Query: 279 tattgagtcagactgtctcagctctctcatccagacatgtttaaatgtgactcagccttc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tattgagtcagactgtctcagctctctcatccagacatgtttaaatgtgactcagccttc 732
Query: 339 ctttgtcatcagcatttttcctggcacaccgtagttttgcacagatactaccctatatcc 398
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 731 ctttgtcatcagcatttttcctggcacaccttagttttgcacagatactaccctatatcc 672
Query: 399 aaaaatccaaagacccgttcagtgtatagcttaactttcaagggaaaacattattttaaa 458
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aaaaatccaaagacctgttcagtgtatagcttaactttcaagggaaaacattattttaaa 612
Query: 459 agttcaaagtttctaatgaaaatactttcttctatgtaagttgaaaagccattaaacacc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 agttcaaagtttctaatgaaaatactttcttctatgtaagttgaaaagccattaaacacc 552
Query: 519 tatgaatttcaactcctttaactgaaaaatgagaaaagtttatgtttatgttc 571
||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 551 tatcaatttcaactcctttaactgaaaaatgagaaaggtttacgtttatgttc 499
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
