Query= MSMg01no537_b10.b1 MSMg01no537_b10.b1 CHROMAT_FILE:
MSMg01no537_b10.b1 PHD_FILE: MSMg01no537_b10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:22 2005
(690 letters)
>mm_chr1_122205211_122206300
Length = 1090
Score = 1292 bits (668), Expect = 0.0
Identities = 683/688 (99%), Gaps = 2/688 (0%)
Strand = Plus / Plus
Query: 4 ggaattctcattcacactaggatagacaatgagtagctattaagggagttaaggatagcc 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcattcacacaaggatagacaatgagtagctattaagggagttaaggatagcc 263
Query: 64 caatataatttggctttggacctgcaacatccaaactcttcaatcacatatgtgctaatc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caatataatttggctttggacctgcaacatccaaactcttcaatcacatatgtgctaatc 323
Query: 124 agtcttgaagaatctataacataggtgtcccccccccc-cttggggaacctcagttcata 182
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 324 agtcttgaagaatctataacataggtgtccccccccccacttggggaacctcagttcata 383
Query: 183 cttccatgtcagtatctcagagcggtatagatgttgtgagagactttttctaaggaacca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttccatgtcagtatctcagagcggtatagatgttgtgagagactttttctaaggaacca 443
Query: 243 agtttcacaaatatactcactccaggcagggcacttaggacagaccaaagtagtaattcc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtttcacaaatatactcactccaggcagggcacttaggacagaccaaagtagtaattcc 503
Query: 303 tctacaatttagcatgaagaagcaatgagtttgctggttgagttttgttgttgtttgttt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctacaatttagcatgaagaagcaatgagtttgctggttgagttttgttgttgtttgttt 563
Query: 363 gtttgttttcacaggagcataggtgactcatgggcagggcatcactaaaaaggccactct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtttgttttcacaggagcataggtgactcatgggcagggcatcactaaaaaggccactct 623
Query: 423 cctgtgggtgacagctcaaggatgctgagcctggggggcttccatgtggaccttcaggca 482
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 624 cctgtgggtgacagctcaaggatgctaagcctggggt-cttccatgtggaccttcaggca 682
Query: 483 gtcggcctcctctctgcctctctaactctggggaggggccttgtgagccttgagagtctt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtcggcctcctctctgcctctctaactctggggaggggccttgtgagccttgagagtctt 742
Query: 543 agctacagagtgctggtattcacctcactcgttgtaggcctccctccaccccagaacatc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agctacagagtgctggtattcacctcactcgttgtaggcctccctccaccccagaacatc 802
Query: 603 tctacttaggaaatggctggacaacctttgcaccaccacatggcccccagcaaccaaagt 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tctacttaggaaatggctggacaacctttgcaccaccacatggcccccagcaaccaaagt 862
Query: 663 tcctagttccctactgaaggtttggggt 690
||||||||||||||||||||||||||||
Sbjct: 863 tcctagttccctactgaaggtttggggt 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_b10.g1 MSMg01no537_b10.g1 CHROMAT_FILE:
MSMg01no537_b10.g1 PHD_FILE: MSMg01no537_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:22 2005
(598 letters)
>mm_chr1_122330476_122331473
Length = 998
Score = 1156 bits (598), Expect = 0.0
Identities = 598/598 (100%)
Strand = Plus / Minus
Query: 1 tgaagggaaaagcctgttttcttttcgtcatgcagaagcagacatggaaaggagaaaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 tgaagggaaaagcctgttttcttttcgtcatgcagaagcagacatggaaaggagaaaggt 815
Query: 61 cctcccaggggatagagtggtcctagtaagttttgtgttaacctgacacaaactagagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 cctcccaggggatagagtggtcctagtaagttttgtgttaacctgacacaaactagagtc 755
Query: 121 acttgagaagaggaatctcaaccgagaaaaatgttcccactgaatttgcctgtgggcctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 acttgagaagaggaatctcaaccgagaaaaatgttcccactgaatttgcctgtgggcctt 695
Query: 181 ttcttgattaatggttgatgagagagggctcagctcactgtccctcctttgagctggtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ttcttgattaatggttgatgagagagggctcagctcactgtccctcctttgagctggtag 635
Query: 241 ccatggggtgtggggcacgtggaccatgccacaagaggaactcgtggaaatagcaaggta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ccatggggtgtggggcacgtggaccatgccacaagaggaactcgtggaaatagcaaggta 575
Query: 301 gagcatgttcaaaccccggaaatctcaaaacttgagagaggcaggggtggaactagctcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gagcatgttcaaaccccggaaatctcaaaacttgagagaggcaggggtggaactagctcc 515
Query: 361 tttcctgttcccatgcctgcctcagagcatgtgaccaggtgacttccaaccaggtcacag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tttcctgttcccatgcctgcctcagagcatgtgaccaggtgacttccaaccaggtcacag 455
Query: 421 gcagtcacctggaatgcctctccatgctaatgagacatctaaggaccttagtctttagcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gcagtcacctggaatgcctctccatgctaatgagacatctaaggaccttagtctttagcc 395
Query: 481 aatgaccttttctcacactggatatgctcccccacaaactacataatacttggttcaccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aatgaccttttctcacactggatatgctcccccacaaactacataatacttggttcaccc 335
Query: 541 cgaataaaggtatgcattcagatcccccctaaataaagaaacattcgaacaagctaag 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cgaataaaggtatgcattcagatcccccctaaataaagaaacattcgaacaagctaag 277
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
