BAC Information

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BAC

Clone NameMSMg01-537C07
Chromosome1 (Build37)
Map Location 156,726,082 - 156,917,308
singlet/doubletdoublet
Overlap geneLOC671336
Upstream geneTeddm1, LOC100043357, Glul, LOC100043359, Cacna1e
Downstream geneIer5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6, Lhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537C07.T7 (MSMg01no537_c07.b1)MSMg01-537C07.TJ (MSMg01no537_c07.g1)
ACCAG604184AG604185
length746747
length of high quality
(start - end)		555 (74 - 628)565 (77 - 641)
definitionCHROMAT_FILE: MSMg01no537_c07.b1 PHD_FILE: MSMg01no537_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:26 2005CHROMAT_FILE: MSMg01no537_c07.g1 PHD_FILE: MSMg01no537_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,726,082 - 156,726,636)(156,916,744 - 156,917,308)
sequence
GGGACGGAGAGGGGGGGGCGCTAAACGACTCACTATATTCAGAGGATCCG
CGGAATTCCTGACAAATTTGCAAGCCTTAACATTGATCTTCCAATTTACA
TCTTAGCTTCTGCCGGGAAGGCGGCCCGGCTTCGGTAACTTCATCTATGC
TGTAACAAATGGTTTCATGGTGAGCTCTTTTTGTTGCAAGTAGCTTTAGA
GTTGCTACATGTATACCTGATCCAGTGACCTAGACCAAGGCTCCCCACCA
CACTATACACACCATGAGGACAAAGACCATTATTATTCCATCATTTTTTA
GAGATCACCAGCTCCCACTATCTCGCCTCCCACCCTCACCCCTCCTTCCA
TCTACTGTTTGGCTCATGAGTCAGGGTATTAGAGTACATGGTTGTCAACC
TACTGTTACACTTTTCTGCTTTTGGTAGTGCCCCCTTGCTTATTGGGAAT
GCAAGGTAACATGTATAAGGAAAAATAATCTACTCTTCTGACCAGAAAAA
TCACCTTGTTTCTCCAGTCCGTAATTGACTTGCCCACTGGAGACCAAGGG
CTGTTGCTGCTCCTCCCGCAGGGCCTCCTCTACTAAGAGAGAAGACAGCA
AANAGGCTGACTTTGATTTTCAGTGGCTAATTTTAATTGTCAACTTGACA
TACACTGGAAGCAGGAACCACAGTTGAGAAATTGCCTCTTTCATCAGACC
GGCCTGTAGGCATGTCTGTGAGGCATTTTCGTGATTGCTAATTAAN

GGAACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGCTGTGAAGAGAAATCAAAGA
CAAAAGCATTAGAGTCTGTCTAAGCTTCCTTACACTAAGACAGGCGCTAG
GGCCAAGAAGGAAACGAAGTCCAGGGTGACCCAGTTTTTGCTCTCAGGGA
GTTCACGCTATAACCAGGGAGGTGTCACATGCTCTTCTGCAAATGAAGGT
CATTTTTCTTTCTGGGAATGAGCTGCTCACAGCAACCGAGGTTGGGGCTT
TGCCTAAGGTGGAGGCAATGAGAACCGGTTTGTCTTCCCAGAGGGAAAAA
AAAGACTTACTTGGGGCCTCTGCTTGCCAGAATGAGCATGCTCAGATAGC
CTGACTCAGGCTGGGGAGCACCTCCTAGTCGCTGGAATCCCGCTGGGGCA
AGTGGCTGTTGGGAGCAGACCGAGGTGAGGCTTTCCCAGGGATGGGAGCT
GAGGAGGTGGATTTGTTAAACCTCCTAAGTGGGTGGCTGGGTGCCAGCTG
CTCCTGACCAGTCCTCCACCCATCGCCCCGAGGAGATGGCGATAAAAAAA
ATTGCTCAACTACTTATGGTCACCACACTTAAAGACATGTCAGAGATCAT
GGTCACCTTCATATATACTCAACGAACAGGATCTAGATATCCTTCACGTG
TGTCAGAACTGTCGTCTCAGATCAGCATCGCTCCCGCTGGCTTGCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_c07.b1 MSMg01no537_c07.b1 CHROMAT_FILE:
MSMg01no537_c07.b1 PHD_FILE: MSMg01no537_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:26 2005
         (555 letters)



>mm_chr1_156725882_156726836
          Length = 955

 Score = 1067 bits (552), Expect = 0.0
 Identities = 554/555 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccttaacattgatcttccaatttacatcttagcttctgccgggaaggcggcccggcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccttaacattgatcttccaatttacatcttagcttctgccgggaaggcggcccggcttc 260

                                                                       
Query: 61  ggtaacttcatctatgctgtaacaaatggtttcatggtgagctctttttgttgcaagtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtaacttcatctatgctgtaacaaatggtttcatggtgagctctttttgttgcaagtag 320

                                                                       
Query: 121 ctttagagttgctacatgtatacctgatccagtgacctagaccaaggctccccaccacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttagagttgctacatgtatacctgatccagtgacctagaccaaggctccccaccacac 380

                                                                       
Query: 181 tatacacaccatgaggacaaagaccattattattccatcattttttagagatcaccagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatacacaccatgaggacaaagaccattattattccatcattttttagagatcaccagct 440

                                                                       
Query: 241 cccactatctcgcctcccaccctcacccctccttccatctactgtttggctcatgagtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccactatctcgcctcccaccctcacccctccttccatctactgtttggctcatgagtca 500

                                                                       
Query: 301 gggtattagagtacatggttgtcaacctactgttacacttttctgcttttggtagtgccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggtattagagtacatggttgtcaacctactgttacacttttctgcttttggtagtgccc 560

                                                                       
Query: 361 ccttgcttattgggaatgcaaggtaacatgtataaggaaaaataatctactcttctgacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttgcttattgggaatgcaaggtaacatgtataaggaaaaataatctactcttctgacc 620

                                                                       
Query: 421 agaaaaatcaccttgtttctccagtccgtaattgacttgcccactggagaccaagggctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaaaatcaccttgtttctccagtccgtaattgacttgcccactggagaccaagggctg 680

                                                                       
Query: 481 ttgctgctcctcccgcagggcctcctctactaagagagaagacagcaaanaggctgactt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 ttgctgctcctcccgcagggcctcctctactaagagagaagacagcaaaaaggctgactt 740

                          
Query: 541 tgattttcagtggct 555
           |||||||||||||||
Sbjct: 741 tgattttcagtggct 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no537_c07.g1 MSMg01no537_c07.g1 CHROMAT_FILE:
MSMg01no537_c07.g1 PHD_FILE: MSMg01no537_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:26 2005
         (565 letters)



>mm_chr1_156916414_156917378
          Length = 965

 Score = 1093 bits (565), Expect = 0.0
 Identities = 565/565 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgctgtgaagagaaatcaaagacaaaagcattagagtctgtctaagcttccttacact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 cttgctgtgaagagaaatcaaagacaaaagcattagagtctgtctaagcttccttacact 836

                                                                       
Query: 61  aagacaggcgctagggccaagaaggaaacgaagtccagggtgacccagtttttgctctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 aagacaggcgctagggccaagaaggaaacgaagtccagggtgacccagtttttgctctca 776

                                                                       
Query: 121 gggagttcacgctataaccagggaggtgtcacatgctcttctgcaaatgaaggtcatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gggagttcacgctataaccagggaggtgtcacatgctcttctgcaaatgaaggtcatttt 716

                                                                       
Query: 181 tctttctgggaatgagctgctcacagcaaccgaggttggggctttgcctaaggtggaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tctttctgggaatgagctgctcacagcaaccgaggttggggctttgcctaaggtggaggc 656

                                                                       
Query: 241 aatgagaaccggtttgtcttcccagagggaaaaaaaagacttacttggggcctctgcttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aatgagaaccggtttgtcttcccagagggaaaaaaaagacttacttggggcctctgcttg 596

                                                                       
Query: 301 ccagaatgagcatgctcagatagcctgactcaggctggggagcacctcctagtcgctgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ccagaatgagcatgctcagatagcctgactcaggctggggagcacctcctagtcgctgga 536

                                                                       
Query: 361 atcccgctggggcaagtggctgttgggagcagaccgaggtgaggctttcccagggatggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 atcccgctggggcaagtggctgttgggagcagaccgaggtgaggctttcccagggatggg 476

                                                                       
Query: 421 agctgaggaggtggatttgttaaacctcctaagtgggtggctgggtgccagctgctcctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 agctgaggaggtggatttgttaaacctcctaagtgggtggctgggtgccagctgctcctg 416

                                                                       
Query: 481 accagtcctccacccatcgccccgaggagatggcgataaaaaaaattgctcaactactta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 accagtcctccacccatcgccccgaggagatggcgataaaaaaaattgctcaactactta 356

                                    
Query: 541 tggtcaccacacttaaagacatgtc 565
           |||||||||||||||||||||||||
Sbjct: 355 tggtcaccacacttaaagacatgtc 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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