BAC Information

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BAC

Clone NameMSMg01-537D21
Chromosome1 (Build37)
Map Location 172,933,601 - 172,933,969
singlet/doubletsinglet
Overlap genenone
Upstream geneDdr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b
Downstream geneFcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537D21.T7 (MSMg01no537_d21.b1)MSMg01-537D21.TJ (MSMg01no537_d21.g1)
ACCAG604260AG604261
length759785
length of high quality
(start - end)
369 (79 - 447)242 (79 - 320)
definitionCHROMAT_FILE: MSMg01no537_d21.b1 PHD_FILE: MSMg01no537_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:34 2005CHROMAT_FILE: MSMg01no537_d21.g1 PHD_FILE: MSMg01no537_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCACAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGG
ATCCGCGGAATTCCAGGACAGTTTACTGTAGACAGACACTGCCTCACCTC
ACCCCAGCCCACCCCCCAAAAAAAGAGAAAAAAAAAAAAAAAAAAAAAAA
AAAAAACCGACCTAAGCCATTTAACAATAAGACACTCAAAGGAGAATCAG
TCACATCCACTCACCACGAGCTGAAGTTCCCTGAGAAAGGAAAGTCAGTG
CTGAAAATGCTGAAGTCAGTCTGCGGTGGAGAGAGACACTGCCCTAAGCT
ATCTCTTTCAGCAGTCTGAGCAGAGTCCTCCTCTTTAAGTGACCTCCACT
AGACCAGACTAGGGTCCTTGCCTTCATCACAGGAAAGAATTTCCGACCTT
CCTAGTATCAAGAGTTGGAGAGTTTATTAAAACGCATTTATTGATTGGTT
GATTGGCTTTTTAAAAACACAATATGCAGTAGTATTTGTAGTCTACACAG
AATATCTAAGTAGTCCTGGTTGACCTGGAACTCACGATGTGGACCTCTGC
CTCTGGAGTGCTAAGGCATGTGCCACCAGGCCTGGCTTTATTGTACTAAG
GCTTGGAAGAAATCTTGCTGGAATTGATTCTCTCCTTCTGCTACGTGGGG
CCCCCGAGGTTCACATTTGATTCTACAGAAATCGGGCCACAGGGAACCTA
TTTGGCTGAAGTAATCCCACAATTCCCCCAGGTTTTGGTTAGGATAAGCA
CGATGGCTA
NGGGCCTATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAAAATCTAAGTGGCTGGGT
ACACCTGTGGGGGATTTTTCTTAATTAAGTCATCTGCAGTGGGAAGATCT
TTTAATTCAGATCTATTGAGGTGGGAGGATCTTCCTTAATCTGAACCATG
CCTTCTGCTAATGGCCCACATAAGGACATGGAAGAAGGAAACTCTCTCTC
CCTCCCCCTCCCCCTCCCCATGCCCCCTCCCCCTTTCCCCTTCTCAATTT
CTCCCCCTCCCCTCTTTCCCTCCCTCTCTTTCTTTCTCCTCCCCCTTTCC
TCCTCTCAATATCTCTCTTTTTCCCTTGCCCCCACCCTCCCTCGGTCTCT
TTCTCTCCTTCTTCCTTTGCCCACCCGCACCTTTTCTGGCTGTCACGTCA
CTTTGTTTACTTGTATAATAGCCCAGTTATTTTTCTGACTTATACTTAAT
ACTCGCTGTATAACCCTGTCTTTTTGGAGCATACTAGCTTTTTGTATTCC
TGTGATTTTTTTTTTGTAATAAAGCTTACTGTTAGGAAAAGCGTGGTTTT
CTGGCTTTTTGGTCTTTTCTTTTTTATCCCCTTTTTTGTTTAAAATTGTC
TGAATCTATTTCCTAAAAACTTATGTTTCCTTTGTGATAATACTTATATC
TCCGAAGTTTATATTTTTTTATGGGGGAAAAATATAATTTGGGCGACTAT
TTTTATCTTTGGTTTTATGGGGCTTAGATACTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_d21.b1 MSMg01no537_d21.b1 CHROMAT_FILE:
MSMg01no537_d21.b1 PHD_FILE: MSMg01no537_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:34 2005
         (369 letters)



>mm_chr1_172933401_172934169
          Length = 769

 Score =  690 bits (357), Expect = 0.0
 Identities = 366/369 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagacagacactgcctcacctcaccccagcccaccccccaaaaaaagagaaaaaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagacagacactgcctcacctcaccccagcccaccccccaaaaaaagagaaaaaaaaaaa 260

                                                                       
Query: 61  aaaaaaaaaaaaaaaaaaccgacctaagccatttaacaataagacactcaaaggagaatc 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaaaaaaaaaaaaaacgacctaagccatttaacaataagacactcaaaggagaatc 320

                                                                       
Query: 121 agtcacatccactcaccacgagctgaagttccctgagaaaggaaagtcagtgctgaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 agtcacatccactcaccacgagctgaagttccctgagaaaggaaagtcagtgctgaagat 380

                                                                       
Query: 181 gctgaagtcagtctgcggtggagagagacactgccctaagctatctctttcagcagtctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgaagtcagtctgcggtggagagagacactgccctaagctatctctttcagcagtctg 440

                                                                       
Query: 241 agcagagtcctcctctttaagtgacctccactagaccagactagggtccttgccttcatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcagagtcctcctctttaagtgacctccactagaccagactagggtccttgccttcatc 500

                                                                       
Query: 301 acaggaaagaatttccgaccttcctagtatcaagagttggagagtttattaaaacgcatt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 acaggaaagaatttccgaccttcctagtatcaagagttggagagtttattaaaatgcatt 560

                    
Query: 361 tattgattg 369
           |||||||||
Sbjct: 561 tattgattg 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)