Query= MSMg01no537_g12.b1 MSMg01no537_g12.b1 CHROMAT_FILE:
MSMg01no537_g12.b1 PHD_FILE: MSMg01no537_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:46 2005
(612 letters)
>mm_chr1_63705566_63706575
Length = 1010
Score = 806 bits (417), Expect = 0.0
Identities = 433/439 (98%), Gaps = 2/439 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagcctggtgacttgtgctacatgcaggtttatacatgaagggtatgaggaaat 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggaattcagcctggagagttgtgctacatgcaggtttatacatgaagggtatgaggaaat 378
Query: 64 tctaggagcaaggaagattatttttcccaaccaccaacaatagaagaaatagctagcaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tctaggagcaaggaagattatttttcccaaccaccaacaatagaagaaatagctagcaaa 318
Query: 124 gctttgatagtgcagcaggtcattaccaatggataaggaaagatcaggcttgaactgatc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gctttgatagtgcagcaggtcattaccaatggataaggaaagatcaggcttgaactgatc 258
Query: 184 tgatgctctttaatttttttttttttactggcctgattttatgacttttattcatttgtg 243
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgatgctctttaa--tttttttttttactggcctgattttatgacttttattcatttgtg 200
Query: 244 tgcgggtgtgcatgtgtgccaacagccaacacgtggaagtcagaggacaagttgtggaca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tgcgggtgtgcatgtgtgccaacagccaacacgtggaagtcagaggacaagttgtggaca 140
Query: 304 ccagttttttctttccaccgtatgaatagagggtcaaactcaggtggtcaggttacccag 363
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 139 ccagttttttctttccaccatatggatagagggtcaaactcaggtggtcaggttacccag 80
Query: 364 tgagccatcttgtctacccctcaagggcacctttcaatattgttcatttccacagatgtc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 tgagccatcttgtctacccctcaagggcacctttcaatattgttcatttccacagatgtc 20
Query: 424 agcaacagagaatacaaaa 442
|||||||||||||||||||
Sbjct: 19 agcaacagagaatacaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1010
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1000
Effective search space: 602000
Effective search space used: 602000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_g12.g1 MSMg01no537_g12.g1 CHROMAT_FILE:
MSMg01no537_g12.g1 PHD_FILE: MSMg01no537_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:46 2005
(606 letters)
>mm_chr1_63529511_63530521
Length = 1011
Score = 1065 bits (551), Expect = 0.0
Identities = 595/613 (97%), Gaps = 9/613 (1%)
Strand = Plus / Plus
Query: 1 tcactatgtaccaatgttcaaacattctaggctgttaatcaggcaggagccttattctag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 tcactatgtaccaatgttcaaacattctaggctgttaatcaggcaggagccttattctgg 260
Query: 61 ggagagtcttgacagtcctcagggaatgctgtgcttgggtgaaaactgtaaaactcagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagagtcttgacagtcctcagggaatgctgtgcttgggtgaaaactgtaaaactcagtg 320
Query: 121 atcggtggctgtaacctaaaggtgtggacctgcagatgtggaatgtggggactaagaggg 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 atcggtggctgtaacctaaaggtgtggacctgcagatgtggaatgtggagactaagaggg 380
Query: 181 ttgctttattagtaaccaagtgagctgagagaagggactcaggatggactaggtggggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgctttattagtaaccaagtgagctgagagaagggactcaggatggactaggtggggca 440
Query: 241 gtgctgaaagctgtagttacttgcaggcactggagaagcgagtctgtgggatcagagtag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgctgaaagctgtagttacttgcaggcactggagaagcgagtctgtgggatcagagtag 500
Query: 301 cacacaaaccccgtggtagcattctcctgtgtatagggcaca--actttagctggctctc 358
||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| ||
Sbjct: 501 cacacgaaccccgtggtagcattctcctgtgtatagg--acaggactttagctggctttc 558
Query: 359 atagtctccttctcctgggggggg--atgcttctctgggggtggggtacgctgtgtgggt 416
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 559 atagtctccttctcctggggggggggatgcttctctgggggtggggtacactgtgtgggt 618
Query: 417 acgtcatgagaagatgtgcaggagtatggtgcaaggtgacagtgtgaggacagattcaga 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acgtcatgagaagatgtgcaggagtatggtgcaaggtgacagtgtgaggacagattcagg 678
Query: 477 tgactttagggcctcaaggtctctgtgtggatggcagtggccccagtgatgagttaagta 536
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 679 tgactttagggcctcaaggtctctgcgtggatggcagtggccccagtgatgagttaagta 738
Query: 537 ggaaaaaaagagcaggattt---aaaaaaaaagtgttactataatctatccagggaggtg 593
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 739 ggaaaaaaagagcaggattttaaaaaaaaaaagtgttactataatctatccaggaaggta 798
Query: 594 gttccagatttag 606
|||||||||||||
Sbjct: 799 gttccagatttag 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1011
Length adjustment: 10
Effective length of query: 596
Effective length of database: 1001
Effective search space: 596596
Effective search space used: 596596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
