BAC Information

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BAC

Clone NameMSMg01-537J12
Chromosome1 (Build37)
Map Location 112,698,241 - 112,698,541
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666508, Cdh7, LOC100041429, EG626652
Downstream geneCdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537J12.T7 (MSMg01no537_j12.b1)MSMg01-537J12.TJ (MSMg01no537_j12.g1)
ACCAG604527AG604528
length748746
length of high quality
(start - end)		623 (38 - 660)612 (78 - 689)
definitionCHROMAT_FILE: MSMg01no537_j12.b1 PHD_FILE: MSMg01no537_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:00 2005CHROMAT_FILE: MSMg01no537_j12.g1 PHD_FILE: MSMg01no537_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCC
GCGGAATTCTTAAAAAGCTAATAAAAATATACCACTATAAATATATAAAA
ACAACAACAACAGCAACAACTTCAACAACAACAGCAAAATAAGAAAAATA
TAAACAGCTGTTTTCACTGATGAATTATGAGAAGCAACTAAAAATGAATT
AATAAAATTATTGTATAAGTACTCCCATTAACTAGAGAATAAATTCCATC
AATACAAGAAACTATTATATAATCATCTCAGAAGACAAAGTTTATTTGAC
AAAAATCCATCAATTCCAAAATAAAAATATTCAGCATATGATGAAAGGAA
AGATACTAAACATCAATGAACATGTTCATATGTTTTGGGAGGCATAGTGG
CAAAGGCCTATTCAAAAGAATGGATTTAAAAAAATCTCTACTTTTTTATC
ATACCCTAGACGCCGATGTGTGCATAATTATCCCGTCCCGCGGGATTCAG
TTATTCGTGGGTGCGAGGGGGACCGCAAACCTGGAAGGAAATGGAAGGAA
GAAAAAGAAGAGTAGGAGACCAGGAAGGGCACCTATCGAGGTCTCGTTTA
TTATGCTGAGGTGCCTTCTTTTTAAAGCATACATCGCAGGGAATATGGGA
GGGGTCAAGGGAGAATTATACAAAGAACAAAGAAGTGGGCATCTGCTGAC
ATGGGGGCCAAGTCAGGCGCCAGGCAGCGGGCACTCTGGATCTTATCN

NNNCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACCCTTTGGAATAGGCAACAGG
TAGAGAATTTTGGGTATTGATTGGCAGTGGTACTTGTCTAGATGGAGTTC
ATTTGACCCATGAGAGGAAGATCTGAGTAGGTTTCCTGGAGCTTATAAGA
ATCTTTTTAAGTTTAGAAAAAAAGACAAATTTGTTAACAACAGGAAGAGT
CTTTCCGGTGAGCTCCTAAAGTCAGAAAGCCTTCATGGAGCAGAGGGGCA
ACAGGGCCTATCCTCCTATATTCAGAAGACTGACTGTATATAAGTTTAGC
ATAATGAAAAACATCTTTACGCCTATATTTAAAAGACAGTTAAGGGAAAC
TTGAAATGTTGAACTTGTGATTATGAAAGTGAACCAAATAGATTTAGCAT
GAGAAACATCTTACTTCTATAATTGACAATAAAGGAAACATGAAATATTG
ATTTTGTGATCATGAAAGTGGATATTATAGAGAAATGTTTTATCAGAGTT
AGGGTAATTGATCAGAACCTCCTTGATGATTGTTAGGATTTTGAAACTTT
TGAAGTCTTAATTTAAGAATGTATAACAATTGGAAGAAATCTTAAGTGGT
TTTGTACCTTTAGTTATTTTTATCACCAAATTTTAATGTCCTCCCACATT
TATATCTTGTGATTGTNCACCTCAAAATTTCCTTTCTTAGACCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_j12.g1 MSMg01no537_j12.g1 CHROMAT_FILE:
MSMg01no537_j12.g1 PHD_FILE: MSMg01no537_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:00 2005
         (612 letters)



>mm_chr1_112697530_112698541
          Length = 1012

 Score =  551 bits (285), Expect = e-161
 Identities = 297/301 (98%)
 Strand = Plus / Minus

                                                                        
Query: 312  gttaagggaaacttgaaatgttgaacttgtgattatgaaagtgaaccaaatagatttagc 371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 gttaagggaaacttgaaatgttgaacttgtgattatgaaagtgaaccaaatagatttagc 953

                                                                        
Query: 372  atgagaaacatcttacttctataattgacaataaaggaaacatgaaatattgattttgtg 431
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 952  atgagaaacatcttacttctataattgacaataaaggaaacttgaaatattgattttgtg 893

                                                                        
Query: 432  atcatgaaagtggatattatagagaaatgttttatcagagttagggtaattgatcagaac 491
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892  atcatgaaagtggatattatagagaaatgttttatcagagttagggtaattgatcagaac 833

                                                                        
Query: 492  ctccttgatgattgttaggattttgaaacttttgaagtcttaatttaagaatgtataaca 551
            ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832  ctcattgatgaatgttaggattttgaaacttttgaagtcttaatttaagaatgtataaca 773

                                                                        
Query: 552  attggaagaaatcttaagtggttttgtacctttagttatttttatcaccaaattttaatg 611
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772  attggaagaaatcttaggtggttttgtacctttagttatttttatcaccaaattttaatg 713

             
Query: 612  t 612
            |
Sbjct: 712  t 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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