NNNTTCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCACCTCATGAATACAGAATGGCAGAGAAGCACCTGAAA
AAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCT
GAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCTGTCTGGCGGTT
CCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCC
TGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGATACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
CAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACA
CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTA
GCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTC
ACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCA
AAACCTAGGATACCCAAGATATAAGATACAATTTGCTAAACACAAGAAAC
TCANGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCCTCTTAGAAG

NCCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGAGTGTCATTTTAAATCA
TCCCCACTGATGGTCATGTTTTATTGAAAAATAGATGACATTTCAGTGGT
AGGCTTCTTTCAAAATTAAGGAGATTTCCTTAGGGATGGCTTACCTTGTA
TGTCTCAGTAAAGGCAGCTTTATTTTACAACTTCACAGGAAATGCCAGGT
GATACAAGAGTAGAAAAAAACAAAACAAAACAAAACAATGAATTATATGT
GGTTGTTACCAGAATGAAGGCCCTCAGTAAGTTTGTGAATTTTTGAATTA
TTCCCTGATAGACAAGAAGCACCTAATTTTTGCAAACATATTTTAACCTT
AAAGCTCCCAAACTTGATCTCAGTAATTTAATTATTTTTTATCTCTTTCT
TTATTCATTTTCCATCCAGGTAAATTACAAGTTATCATCACTGTCTCTTC
TGGTTTCTTAAATATTCGATACATGGTTGCTGGGTAAGTATAATATCTTT
TCAGATGTTAATGATATTTTATTTCAATATATTGTCTGTGGTACTTGTGT
CTCATTCTTAGCACAGTCTACATGGTGCCTGTGACCATTAGAGCAGAATT
AAAAGTATGAGCTAGGTCCTATGCCCTAGTTTGCTTCTGTGGTACTGTGA
TAAATTAAGCGAATTTTTGCAGGGGTAGTCTTAGAACTATCCGGN

Query= MSMg01no537_l01.g1 MSMg01no537_l01.g1 CHROMAT_FILE:
MSMg01no537_l01.g1 PHD_FILE: MSMg01no537_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:07 2005
         (610 letters)



>mm_chr1_111602988_111603997
          Length = 1010

 Score = 1089 bits (563), Expect = 0.0
 Identities = 596/615 (96%), Gaps = 14/615 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgagtgtcattttaaatcatccccactgatggtcatgttttattgaaaaatagatgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgagtgtcattttaaatcatccccactgatggtcatgttttattgaaaaatagatgac 260

                                                                       
Query: 61  atttcagtggtaggcttctttcaaaattaaggagatttccttagggatggcttaccttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcagtggtaggcttctttcaaaattaaggagatttccttagggatggcttaccttgt 320

                                                                       
Query: 121 atgtctcagtaaaggcagctttattttacaacttcacaggaaatgccaggtgatacaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtctcagtaaaggcagctttattttacaacttcacaggaaatgccaggtgatacaaga 380

                                                                       
Query: 181 gtagaaaaaaacaaaacaaaacaaaacaa-----tgaattatatgtggttgttaccagaa 235
           |||||||||||||||||||||||||||||     ||||||||||||||||||||||||||
Sbjct: 381 gtagaaaaaaacaaaacaaaacaaaacaaaacaatgaattatatgtggttgttaccagaa 440

                                                                       
Query: 236 tgaaggccctcagtaagtttgtgaatttttgaattattccctgatagacaagaagcacct 295
           |||||||||||||||||||||||||||||||||||||||||||||||||         ||
Sbjct: 441 tgaaggccctcagtaagtttgtgaatttttgaattattccctgatagac---------ct 491

                                                                       
Query: 296 aatttttgcaaacatattttaaccttaaagctcccaaacttgatctcagtaatttaatta 355
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 492 aatttttgcaaacatattttaaccttaaagctcccaaatttgatctcagtaatttaatta 551

                                                                       
Query: 356 ttttttatctctttctttattcattttccatccaggtaaattacaagttatcatcactgt 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttttttatctctttctttattcattttccatccaggtaaattacaagttatcatcactgt 611

                                                                       
Query: 416 ctcttctggtttcttaaatattcgatacatggttgctgggtaagtataatatcttttcag 475
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 612 ctcttctggtttcttaaatattcgatacatggttgctgggtaagtataacatcttttcag 671

                                                                       
Query: 476 atgttaatgatattttatttcaatatattgtctgtggtacttgtgtctcattcttagcac 535
           |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 672 atgttaatgatattttatttcaatatcttgtctgtggtacttctgtctcattcttagcac 731

                                                                       
Query: 536 agtctacatggtgcctgtgaccattagagcagaattaaaagtatgagctaggtcctatgc 595
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 732 agtctacatggtgcctgtgaccattagagcagaattgaaagtatgagctaggtcctatgc 791

                          
Query: 596 cctagtttgcttctg 610
           |||||||||||||||
Sbjct: 792 cctagtttgcttctg 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)