Query= MSMg01no537_m08.b1 MSMg01no537_m08.b1 CHROMAT_FILE:
MSMg01no537_m08.b1 PHD_FILE: MSMg01no537_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:14 2005
(544 letters)
>mm_chr1_153984006_153984949
Length = 944
Score = 944 bits (488), Expect = 0.0
Identities = 530/544 (97%)
Strand = Plus / Minus
Query: 1 agggcaggctgtattcagaggtcagctgctggaatcagatgtttggccaagtttgccttc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agggcaagctgtattcagaggtcagctgctggaatcagatgtttggccaagtttgccttc 568
Query: 61 tccagatttttaaaacttccttttctctccgaagttcagttctcagagctaaaactgaag 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 567 tccagatttttaaaacttccttttctctccaaagttcagttctcagagctaaaactgaag 508
Query: 121 tgagactttcagtgtttcaaaattgaatcgaaaatataatgtgggtcttcattatgattg 180
|||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 507 tgaggctttcagtgtttcaaaattgaatctaaaatataatgtgagtcttcattatgattg 448
Query: 181 taatttacaatgtgttttattttattcaataatttttattggatagagaacctaagactt 240
|||||||||||||||||| |||||| ||||||||||||| || |||||||||||||||||
Sbjct: 447 taatttacaatgtgttttcttttatccaataatttttatcgggtagagaacctaagactt 388
Query: 241 gacgagaggggttcataaaactacaaaataaagaacaccaacttattgatccttcagaca 300
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 387 aatgagaggggttcataaaactacagaataaagaacaccaacttattgatccttcagaca 328
Query: 301 aggcacttaaaatgctgtttatgtgttaaaataaatacacatctattattaaataaaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aggcacttaaaatgctgtttatgtgttaaaataaatacacatctattattaaataaaatt 268
Query: 361 cacatgaattcctcagaaaaattgcaagactctgaaacaaggccatgcctgaaaaacata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cacatgaattcctcagaaaaattgcaagactctgaaacaaggccatgcctgaaaaacata 208
Query: 421 ctgtaaaggactagggagttggctcagtagattaggacatgggttgctctcgcagaagac 480
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 207 ctgtaaaggactagggagttggctaagtagattaggatatgggttgctctcgcagaagac 148
Query: 481 ccagggtcagttcccagcacccatatggtagctcacagccatgtgtaactatgtgagtag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ccagggtcagttcccagcacccatatggtagctcacagccatgtgtaactatgtgagtag 88
Query: 541 tttc 544
||||
Sbjct: 87 tttc 84
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_m08.g1 MSMg01no537_m08.g1 CHROMAT_FILE:
MSMg01no537_m08.g1 PHD_FILE: MSMg01no537_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:14 2005
(328 letters)
>mm_chr1_153834625_153835352
Length = 728
Score = 455 bits (235), Expect = e-132
Identities = 276/299 (92%), Gaps = 20/299 (6%)
Strand = Plus / Plus
Query: 46 tttgttttgttttgttttgttttgtgtctgtgagagttcaaacaacctctgcctcagtgg 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttgttttgttttgttttgttttgtgtctgtgagagttcaaacaacctctgcctcagtgg 305
Query: 106 aaccgatctttgtgcctcagccaaggtcactcatgtttacttcagaagaacctcatactc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaccgatctttgtgcctcagccaaggtcactcatgtttacttcagaagaacctcatactc 365
Query: 166 cttctagagtaggccctgtactctgtaaactcctctttaacctcttcttaaggcaaagga 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cttctagagtaggccctgtactctgtaaactcctctttaacctcttcttaaggcaaagga 425
Query: 226 gagtgagtgagtgggtgagtgagtgtgcatg--------tgtccgtgtgtgtccgtgtgt 277
||||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct: 426 gagtgagtg----ggtgagtgagtgtgcgtgcgtgcgtgtgtccgtgtgtgtccgtgtgt 481
Query: 278 gtgtg-gtgt--gtgt--gtgtgtgtgtg---tgtgtgtgtgtgtgtgtgtgtgtgtgt 328
|||| |||| |||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 482 gtgtccgtgtccgtgtccgtgtgtgtgtggggtgtgtgtgtgtgtgtgtgtgcgtgtgt 540
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
