Query= MSMg01no537_m16.b1 MSMg01no537_m16.b1 CHROMAT_FILE:
MSMg01no537_m16.b1 PHD_FILE: MSMg01no537_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:15 2005
(689 letters)
>mm_chr1_128546422_128547510
Length = 1089
Score = 1232 bits (637), Expect = 0.0
Identities = 673/685 (98%), Gaps = 1/685 (0%)
Strand = Plus / Minus
Query: 5 gaattctgtaaatctccagtcagaaaggctgaggcatttcaggagtgaagaggaattttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 gaattctgtaaatctccagtcagaaaggctgaggcatttcaggagtgaagaggaattttc 788
Query: 65 tggggtgactttgtcaatcacagtgaatactttattttttgttctttcactttgtaattt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tggggtgactttgtcaatcacagtgaatactttattttttgttctttcactttgtaattt 728
Query: 125 tatggtagttttttgttttgtttttgtttgtttgtttttaatgttaagtagtaggttcag 184
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 727 tatggtagttttttgttttg-ttttgtttgtttgtttttaatgttaagtaataggttcag 669
Query: 185 tggtttgaggttgtgtgtaaatcttctcctttgcaaatggtatggtaaatgctgtgcgtg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tggtttgaggttgtgtgtaaatcttctcctttgcaaatggtatggtaaatgctgtgcgtg 609
Query: 245 tgcgaggtttcctggagttagaataaggaaatattgataccattactcaggcactggcat 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 608 tgcgaggtttcctggagttagaataaggaaatactgataccattactcaggcactggcat 549
Query: 305 gaatcactctgccatttcattttgagaggcagaccaagttgatgcacctggtccacataa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 548 gaatcactctgccatttcattttgagaggcagaccaagttgatgcacctggtccagataa 489
Query: 365 tctttggaaagtaagggtgaaatctgaagtttcatagcaggacttcagtctcttaagagt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tctttggaaagtaagggtgaaatctgaagtttcatagcaggacttcagtctcttaagagt 429
Query: 425 ctctctctctttctcttttgtgtgtgtgcacatgtgcgcagatgtgtgccatgtagatat 484
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 428 ctctctctctttctcttttgtgtgtgtgcacatgtgtgcagatgtgtgccatgtagatat 369
Query: 485 ttgcctatatgtatggaggttagaggtcagcatcaggtgtcttccttatttccttcccat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttgcctatatgtatggaggttagaggtcagcatcaggtgtcttccttatttccttcccat 309
Query: 545 tttactttcgagaaagaatctccattgaatgtgaagcatcagttctgctagatccattca 604
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 308 tttacttttgagaaagaatctccattgaatgtgaagcatcagttctgctagatccactca 249
Query: 605 ccaactagctttggaggtcactgtctttcctcagttagcactgcggctacagacacaggc 664
||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 248 ccaactagctttggaggtcactgtctttcctcacttagcgctgcggctacactcacaggc 189
Query: 665 ctcctcagtcattcttttccatggg 689
|||||| ||||||||||||||||||
Sbjct: 188 ctcctcggtcattcttttccatggg 164
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_m16.g1 MSMg01no537_m16.g1 CHROMAT_FILE:
MSMg01no537_m16.g1 PHD_FILE: MSMg01no537_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:15 2005
(659 letters)
>mm_chr1_128415682_128416740
Length = 1059
Score = 1220 bits (631), Expect = 0.0
Identities = 652/659 (98%)
Strand = Plus / Plus
Query: 1 tttcctggaagtaacctttagagacatggatgccaaaacttctgccggaaaatataaact 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcctggcagtaacctttagagacatggatgccaaaacttctgccggaaaatataaact 260
Query: 61 gacatcactgttacagagagcatggaggaatatctgggaatatctgggaatatctgggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 gacatcactgttacagagagcatggaggaatatctgggaatatctgggaatgtctgggat 320
Query: 121 gaggtcattttatgtccgtttccatttcctttgggaaagcatacaaatccagagaatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggtcattttatgtccgtttccatttcctttgggaaagcatacaaatccagagaatgaa 380
Query: 181 agcaagttatgttaattgtaaatactcttttcttttagagtagggatcacagctaaacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcaagttatgttaattgtaaatactcttttcttttagagtagggatcacagctaaacca 440
Query: 241 aagagcaaaggagaacttctaggtttcaagaattttgttaaaactctttgatggctagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagagcaaaggagaacttctaggtttcaagaattttgttaaaactctttgatggctagaa 500
Query: 301 gggaggtgcctctggcctctttttctaacaggttctgtacatgttgatcaattaagtgct 360
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 gggaggtgcctccggcctctttttctaacaggttctgtaaatgttgatcaattaagtgct 560
Query: 361 tcagtctttctggcagtgcaggaactgtgccccacgggaagcaggagttaagtgctttcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagtctttctggcagtgcaggaactgtgccccacgggaagcaggagttaagtgctttcc 620
Query: 421 caaggcaaacagtttgtagtcaatatcttatagattcttggaattaggtatcaaggcttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaggcaaacagtttgtagtcaatatcttatagattcttggaattaggtatcaaggcttc 680
Query: 481 gtctgcccttcagagaggggagggtggggaaacaaaatgaaacaaaaatccctagagttt 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctgcccttcagagaggggagggtggggaaacaaaatgaaacaaaaatccctagagttt 740
Query: 541 cagtctgaggacatggctcattcaatgaactacttcccatgcaagcatgagaacctgagc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagtctgaggacatggctcattcaatgaactacttcccatgcaagcatgagaacctgagc 800
Query: 601 ctggatcagcagaaactatgataagaagccagggatggtggcttgcatctgtaaactca 659
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 801 ctggatcagcagaaactatgataagaagccagggatggtggcatgcatctgtaagctca 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
