XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG
GTTTGGAACTTGTAGCCTATTTATATAAGGTGAATGGATGACACTACAAT
GTTACTAGATCCTTTCTGAACCTGATTTAATAAAACTGGCATTGTTTTAT
AGATGTATTGACTTTTAGAAAAGAAAAATGTTTGGTTCTGTCCTCTAGTT
TTCTACTGAAATGGTGATGCATTGAGACATAGTAGCTTTCTGAAGGTCTC
ACAGCAAAAGTATGACTAAGCTAGAAACCAGACCTCTTACCATTCAGGGT
TATTTATGTACAGACCCTGAGACCCACCCCAGCACATTGTTCTCTTCTTT
TTCTATCCGGACGGTGCTGCTCACTTTATGCTCTACTGTGGCAGGAGAAG
GAGGGGGGGGGCGGTCCAGATCCTGCCTTCTAACTCTGCCTATCAGTGTT
TAGTGGCATCCATCTGAAAGAAGCTATGATGGAGTGAAATGAGTGCTCCT
CTGCATTCTTATATGGAGAACAAGCCAGGTCCAATAGGAAGACATTCAAG
TAAACATGGTCTCGATGATGGTAGTGAAGCATCCTACCGGCATTGACCAC
TTGGGACAGAAGAATGCCAAGGGCCTAACAGCCTTTCCTAATCCAGTGCC
AGACACCCACTTGAAGTCAGCAGTATTGCAGAGATGGGCTATCTGATATC
AATAGCCTTCAAAGTACATTCACTATCCTGGATTCTTATAGAGCAAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAGTGCTAACCCAATGCTGGATTCACTTAGGTTGGCAGC
AAATTTTCAGAATTAGGAACTGATCAGGTGATTGTCTGCAGTTTTCAAAA
AACTGCTTTAGGCAAGAGGAAAAAGGTTTAAATTAAATAATCAAGCAGAT
GTCCGCAGACGGGAGCTGCATCAGGCGGCAGAAACAGGGTTTGTAATAAT
AAAATAATATAGAGGAAAATGGATTTTGAAACTCTCCCAGAGGCAGAGAG
AAATTTCAGGGAACGCCCTGCCTTTTTCTCTCTAGCCCTTACAGCAGAAG
TTCTCTGCCCTCTTTGTGTTGTCTAAGGTCTGGTGCACCAGTCTGTTCAC
ATGTTCAGTTCATGTGTGTTCGTGTCTAGTCGTCTGAATGTTCTGTGTTT
CATGTTGGAAAATAAAGATGGCTAAAACTTTATCTGCTGGTTCAGCAAGA
GAGTGACCACAGGCTTTAGCCAGGATCAGGCACAGCAGGAGGGTTCCTGC
TGGAAAAAGTTTTTTGAGAAAGGGAGTCTGCAGCCTCTTAGTTTTGGGGA
GAAAACGCTGATAGATGTTTTTATCCTGGAGGGTTCTCTGCAATCGTGAT
TATTGCATTTAGCTAATGACAAGGTGCTTTTTTTTTTTTAATCTCATAGT
TATAGCTAGAAAAATTGAAATTCTTTGATTTGGTCTAATTTATTAGACTC
GTTN

Query= MSMg01no538_b20.b1 MSMg01no538_b20.b1 CHROMAT_FILE:
MSMg01no538_b20.b1 PHD_FILE: MSMg01no538_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:41 2005
         (559 letters)



>mm_chr1_53973777_53974731
          Length = 955

 Score = 1023 bits (529), Expect = 0.0
 Identities = 550/559 (98%), Gaps = 4/559 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggtttggaacttgtagcctatttatataaggtgaatggatgacactacaatgttactag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gggtttggaacttgtagcctatttatataaggtgaatggatgacactacaatgttactag 696

                                                                       
Query: 61  atcctttctgaacctgatttaataaaactggcattgttttatagatgtattgacttttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 atcctttctgaacctgatttaataaaactggcattgttttatagatgtattgacttttag 636

                                                                       
Query: 121 aaaagaaaaatgtttggttctgtcctctagttttctactgaaatggtgatgcattgagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aaaagaaaaatgtttggttctgtcctctagttttctactgaaatggtgatgcattgagac 576

                                                                       
Query: 181 atagtagctttctgaaggtctcacagcaaaagtatgactaagctagaaaccagacctctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 atagtagctttctgaaggtctcacagcaaaagtatgactaagctagaaaccagacctctt 516

                                                                       
Query: 241 accattcagggttatttatgtacagaccctgagacccaccccagcacattgttctcttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 accattcagggttatttatgtacagaccctgagacccaccccagcacattgttctcttct 456

                                                                       
Query: 301 ttttctatccggacggtgctgctcactttatgctctactgtggcaggagaaggagggggg 360
           ||||| ||||  |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 455 ttttccatcccaacggtgctgctcactttatgctctactgtggcaggagaaggaaggggg 396

                                                                       
Query: 361 gggcggtccagatcctgccttctaactctgcctatcagtgtttagtggcatccatctgaa 420
           ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gg----tccagatcctgccttctaactctgcctatcagtgtttagtggcatccatctgaa 340

                                                                       
Query: 421 agaagctatgatggagtgaaatgagtgctcctctgcattcttatatggagaacaagccag 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ggaagctatgatggagtgaaatgagtgctcctctgcattcttatatggagaacaagccag 280

                                                                       
Query: 481 gtccaataggaagacattcaagtaaacatggtctcgatgatggtagtgaagcatcctacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gtccaataggaagacattcaagtaaacatggtctcgatgatggtagtgaagcatcctacc 220

                              
Query: 541 ggcattgaccacttgggac 559
           |||||||||||||||||||
Sbjct: 219 ggcattgaccacttgggac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 955
Length adjustment: 10
Effective length of query: 549
Effective length of database: 945
Effective search space:   518805
Effective search space used:   518805
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)