Query= MSMg01no538_d03.b1 MSMg01no538_d03.b1 CHROMAT_FILE:
MSMg01no538_d03.b1 PHD_FILE: MSMg01no538_d03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:47 2005
(570 letters)
>mm_chr1_68979434_68980403
Length = 970
Score = 1089 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus
Query: 4 ggaattcaccaaaaatcttttcttatcccataccaaccctaagagactcactgtgctggt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaccaaaaatcttttcttatcccataccaaccctaagagactcactgtgctggt 263
Query: 64 cttcagtgaggctttagagtttgtattttagatattacctcttgcatttctagaacaatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttcagtgaggctttagagtttgtattttagatattacctcttgcatttctagaacaatg 323
Query: 124 agactgcttcagaagcattgtccagggagatagctacaccttcaggaaagcagtctaaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agactgcttcagaagcattgtccagggagatagctacaccttcaggaaagcagtctaaca 383
Query: 184 tcaactcaaccactttactgaagcttcaactcttccagagtctctgattagaactttact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcaactcaaccactttactgaagcttcaactcttccagagtctctgattagaactttact 443
Query: 244 actaaaacagggccctttgtttgaagtattgtttttgaggatctatctgcttggttccaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actaaaacagggccctttgtttgaagtattgtttttgaggatctatctgcttggttccaa 503
Query: 304 tatttcctcttggtcagaggatcttaaatcatacgtcctgtggtttgtatttcaaatggc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tatttcctcttggtcagaggatcttaaatcatacgtcctgtggtttgtatttcaaatggc 563
Query: 364 aatttggaaagtaacagagaatactactaatagttattggtagctgacaggcgattccac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aatttggaaagtaacagagaatactactaatagttattggtagctgacaggcgattccac 623
Query: 424 aaaggaatctcagggacctagcaacagcttatattatcatctgctcacatgctgcctgcc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaaggaatctcagggacctagcaacagcttatattatcatctgctcacatgctgcctgcc 683
Query: 484 aagtgcaggtggcctggcatttaaaacaagactgctgatcatcttgctctctctctctct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aagtgcaggtggcctggcatttaaaacaagactgctgatcatcttgctctctctctctct 743
Query: 544 ctctctctctctctctctctctc 566
|||||||||||||||||||||||
Sbjct: 744 ctctctctctctctctctctctc 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_d03.g1 MSMg01no538_d03.g1 CHROMAT_FILE:
MSMg01no538_d03.g1 PHD_FILE: MSMg01no538_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:47 2005
(399 letters)
>mm_chr1_69116955_69117752
Length = 798
Score = 760 bits (393), Expect = 0.0
Identities = 396/397 (99%), Gaps = 1/397 (0%)
Strand = Plus / Minus
Query: 1 ttttacttactgtttcctagaaatacatggggcgagtcaacaaaatgaaaaaaaaattaa 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 556 ttttacttactgtttcctagaaatacat-gggcgagtcaacaaaatgaaaaaaaaattaa 498
Query: 61 ttaacttttagggccgcttttgaaaacagccctgtagtagtcatttatatgttaatattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttaacttttagggccgcttttgaaaacagccctgtagtagtcatttatatgttaatattt 438
Query: 121 tacaatgactaatttaatagacagatggtagttgatattacagtacgagagtcaggcatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tacaatgactaatttaatagacagatggtagttgatattacagtacgagagtcaggcatt 378
Query: 181 tccctgggcctaatgattatctacctagttttcaattagagaagatggccaattatctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tccctgggcctaatgattatctacctagttttcaattagagaagatggccaattatctag 318
Query: 241 agtgggttttattttaattacctagtgattaggccagctaggtaaccagccccaaggaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agtgggttttattttaattacctagtgattaggccagctaggtaaccagccccaaggaaa 258
Query: 301 gagaactcaactgtgtgtgagtgaattcctacaatgtgcacctaccataggtttgttttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gagaactcaactgtgtgtgagtgaattcctacaatgtgcacctaccataggtttgttttc 198
Query: 361 ccttcttccttccttccttccttccttccttccttcc 397
|||||||||||||||||||||||||||||||||||||
Sbjct: 197 ccttcttccttccttccttccttccttccttccttcc 161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 798
Length adjustment: 9
Effective length of query: 390
Effective length of database: 789
Effective search space: 307710
Effective search space used: 307710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
