BAC Information

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BAC

Clone NameMSMg01-538D12
Chromosome1 (Build37)
Map Location 108,397,014 - 108,534,079
singlet/doubletdoublet
Overlap geneBcl2
Upstream genePign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp, LOC626075
Downstream geneLOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538D12.T7 (MSMg01no538_d12.b1)MSMg01-538D12.TJ (MSMg01no538_d12.g1)
ACCAG605002AG605003
length742738
length of high quality
(start - end)		658 (38 - 695)534 (72 - 605)
definitionCHROMAT_FILE: MSMg01no538_d12.b1 PHD_FILE: MSMg01no538_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:49 2005CHROMAT_FILE: MSMg01no538_d12.g1 PHD_FILE: MSMg01no538_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,533,426 - 108,534,079)(108,397,014 - 108,397,547)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAG
GCCAATGATAGATCCTGTAACAAAACGATGAGGTGGATTAGCACCGGAGG
AGTGCTCAGTTGTCCTCTGTCCCCCACATACATGGATACATACATACCCT
CACATATACCTGCAGCTGTACACATATACACCTGCAAATATACACATGCA
AGCATTGACCTGCCTATATGTACGCATACACAAAATCAAACAAGTCCGAG
TCAGTCATTTTGATTGGCTACCGAGGACGCTAATAATTATGCCAGTTCTG
TGGCCTCGATAGTTGGCTCCTGGGAGGAAGCAAACACTTTACTGTGCACA
GAACTTTAAGGCTTCATGATTTCAATGGGCCATTTCCTACTGTATCTCCT
GTGAATGAAAAAGCAAGCATTCCAGGAACGGGTTAACAGGTCACTTGAAA
GAGTGGGCACATTTCTTACAGAAATCAGAACAAGAGATAAACAAAAAACC
CACCCTTTTGTGTGTGGAAGCAGGAAACCCTCAGGACGTGCAGTTAGCAG
TGAGAACTCAAGGTGCAGGCTGAAATGGAAACATGCTATAAACAGACTGA
AGGAGAGACAACAGACTTAAGGAAAAACATCTGTCCCGGAATCCAACATC
CAAAAGCCCCATCTGTGGCCTAGGATCTTGCAATGCTTAAAACAGGAATG
TGGAGGGGCCCAATGAAAGCTCTGCAAGCTCTCTCTCTTCTN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTTTTCTAGCTTGCTTATTCTTCCAATC
CTTTGTACACATAATTTATCTTAAATGTCTCGTTGTTGTTGTTGTTGTTT
TGTTGGTTTCTTTGTTGTTGCTTTTTGAGACAGGGTTTCTCTGTATAGCC
CTGGCTGTCCTGGAACTCAGTTTGTAGACCAGACTGGCCTAGAACTCAGT
TTATAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCC
TGAGTACTGGAATTAAAGGTGTGCGCCGCCACGCCAAGCTTAAATGTCTC
TTTTAACATGTAATATCTAGGTGTGAATGTATATTCCAGGTGTGGCCTAG
CAGTAAGCCTCTATTACTATGACTGTGGATTATACTCTCATTGCTATGAT
GGTTTGGATTGTGATTGTCAATCCATTACCAAATCTGTTCTTCCCTGTAT
ATTCCTTCAACATTAATTTTTAAAGACATAAATGTGGGCTGGGAGCATAG
CTTAGTTGGCAGATCACTTCCCGAGCATAGGTGAGGCCCTGGGTTTGATC
CGTAGCCCAGGAACTGGGAATGGTAGTGCATAAAGTCTATAATTCCAGGA
CTCACGAGGGAGGCAGGGAATCAGAAGCTCAAGGTCATTTTTAGCTATAT
AGCAAGTCCAAAGCCAGCCTCACATGTATGAAACTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_d12.b1 MSMg01no538_d12.b1 CHROMAT_FILE:
MSMg01no538_d12.b1 PHD_FILE: MSMg01no538_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:49 2005
         (658 letters)



>mm_chr1_108533117_108534174
          Length = 1058

 Score = 1218 bits (630), Expect = 0.0
 Identities = 648/654 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggccaatgatagatcctgtaacaaaacgatgaggtggattagcaccggagga 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 963 gaattccaggccaatgatagaccctgtaacaaaacgatgaggtggattagcaccggagga 904

                                                                       
Query: 65  gtgctcagttgtcctctgtcccccacatacatggatacatacataccctcacatatacct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gtgctcagttgtcctctgtcccccacatacatggatacatacataccctcacatatacct 844

                                                                       
Query: 125 gcagctgtacacatatacacctgcaaatatacacatgcaagcattgacctgcctatatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 gcagctgtacacatatacacctgcaaatatacacatgcaagcattgacctgcctatatgt 784

                                                                       
Query: 185 acgcatacacaaaatcaaacaagtccgagtcagtcattttgattggctaccgaggacgct 244
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 783 acgcacacacaaaatcaaacaagtctgagtcagtcattttgattggctaccgaggacgct 724

                                                                       
Query: 245 aataattatgccagttctgtggcctcgatagttggctcctgggaggaagcaaacacttta 304
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 723 aataattatgccagttctgtggcctcaatagttggctcctgggaggaagcaaacacttta 664

                                                                       
Query: 305 ctgtgcacagaactttaaggcttcatgatttcaatgggccatttcctactgtatctcctg 364
           ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 663 ctgtgcacagaacttgaaggcttcatgatctcaatgggccatttcctactgtatctcctg 604

                                                                       
Query: 365 tgaatgaaaaagcaagcattccaggaacgggttaacaggtcacttgaaagagtgggcaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgaatgaaaaagcaagcattccaggaacgggttaacaggtcacttgaaagagtgggcaca 544

                                                                       
Query: 425 tttcttacagaaatcagaacaagagataaacaaaaaacccacccttttgtgtgtggaagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tttcttacagaaatcagaacaagagataaacaaaaaacccacccttttgtgtgtggaagc 484

                                                                       
Query: 485 aggaaaccctcaggacgtgcagttagcagtgagaactcaaggtgcaggctgaaatggaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aggaaaccctcaggacgtgcagttagcagtgagaactcaaggtgcaggctgaaatggaaa 424

                                                                       
Query: 545 catgctataaacagactgaaggagagacaacagacttaaggaaaaacatctgtcccggaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 catgctataaacagactgaaggagagacaacagacttaaggaaaaacatctgtcccggaa 364

                                                                 
Query: 605 tccaacatccaaaagccccatctgtggcctaggatcttgcaatgcttaaaacag 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tccaacatccaaaagccccatctgtggcctaggatcttgcaatgcttaaaacag 310


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no538_d12.g1 MSMg01no538_d12.g1 CHROMAT_FILE:
MSMg01no538_d12.g1 PHD_FILE: MSMg01no538_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:49 2005
         (534 letters)



>mm_chr1_108396814_108397747
          Length = 934

 Score = 1017 bits (526), Expect = 0.0
 Identities = 532/534 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttttctagcttgcttattcttccaatcctttgtacacataatttatcttaaatgtctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttttctagcttgcttattcttccaatcctttgtacacataatttatcttaaatgtctc 260

                                                                       
Query: 61  gttgttgttgttgttgttttgttggtttctttgttgttgctttttgagacagggtttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgttgttgttgttgttttgttggtttctttgttgttgctttttgagacagggtttctc 320

                                                                       
Query: 121 tgtatagccctggctgtcctggaactcagtttgtagaccagactggcctagaactcagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtatagccctggctgtcctggaactcagtttgtagaccagactggcctagaactcagtt 380

                                                                       
Query: 181 tatagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcctgagtactgga 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcctgagtactgga 440

                                                                       
Query: 241 attaaaggtgtgcgccgccacgccaagcttaaatgtctcttttaacatgtaatatctagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaaaggtgtgcgccgccacgccaagcttaaatgtctcttttaacatgtaatatctagg 500

                                                                       
Query: 301 tgtgaatgtatattccaggtgtggcctagcagtaagcctctattactatgactgtggatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgaatgtatattccaggtgtggcctagcagtaagcctctattactatgactgtggatt 560

                                                                       
Query: 361 atactctcattgctatgatggtttggattgtgattgtcaatccattaccaaatctgttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atactctcattgctatgatggtttggattgtgattgtcaatccattaccaaatctgttct 620

                                                                       
Query: 421 tccctgtatattccttcaacattaatttttaaagacataaatgtgggctgggagcatagc 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccctgtatattccttcaatattaatttttaaagacataaatgtgggctgggagcatagc 680

                                                                 
Query: 481 ttagttggcagatcacttcccgagcataggtgaggccctgggtttgatccgtag 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttagttggcagatcacttcccgagcataggtgaggccctgggtttgatccgtag 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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