Query= MSMg01no538_k05.b1 MSMg01no538_k05.b1 CHROMAT_FILE:
MSMg01no538_k05.b1 PHD_FILE: MSMg01no538_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:20 2005
(637 letters)
>mm_chr1_134108254_134109290
Length = 1037
Score = 1152 bits (596), Expect = 0.0
Identities = 626/638 (98%), Gaps = 4/638 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttccgtgctgagtaaggtaactttgttcaggcgttctcctagcttagtacctg 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ggaattcttccgcgctgagtaaggtaactttgttcaggcgttctcctagcttagtacctg 259
Query: 64 gccctgggcaggtaggtgttcaagatacggtaactgagacgctcggttggaagcgttaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gccctgggcaggtaggtgttcaagatacggtaactgagacgctcggttggaagcgttaca 319
Query: 124 aatagccagtctgcctttcgtatctctcacatgttccactgtagctagcgcagtgctggg 183
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 320 aatagccagtctgcctttcgtatctctcacatgttctactgtagctagcgcagtgctggg 379
Query: 184 tgtagaggagagacttagtaaatacagattaaactgaactgaagacgggtaggtatgggg 243
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 380 tgtagaggagagacttagtaaatacaggtcaaactgaactgaagacgggtaggtatgggg 439
Query: 244 ttgtgaggagggctgcgcacgcctgttaatcccagcactgagaaggctgaggcacaggat 303
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 440 ttgtgaggagggctgcgcacgcctgttaatcccagcactgagaaggctgagacacaggat 499
Query: 304 cgtgaattgaagggcagtctgtgataaatagcaaggttcatctcaaaactgcaaaaacag 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtgaattgaagggcagtctgtgataaatagcaaggttcatctcaaaactgcaaaaacag 559
Query: 364 gaatggtg----cggtgtggtgtgttggaagggaattcttccactgcagtgtgctgagta 419
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaatggtgggtgcggtgtggtgtgttggaagggaattcttccactgcagtgtgctgagta 619
Query: 420 tcctgcaggaggcgctctagtcatctcagcctcagcggagccggggtggggtggggtgta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcctgcaggaggcgctctagtcatctcagcctcagcggagccggggtggggtggggtgta 679
Query: 480 ggattggcccggggaatgggagaagctcgaaggaaaaacagccccacgcgtcactcacat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggattggcccggggaatgggagaagctcgaaggaaaaacagccccacgcgtcactcacat 739
Query: 540 atttacatcgcaactgtcaaaatagttatttttaagtcgagttccgtctgccacgagttt 599
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 740 atttacatcgcaactgtcaaaacagttatttttaagtcgagttccgtctgccacgagttt 799
Query: 600 aaaaccaagctgcgcgggggcggtctaatgcgcgtgcg 637
||||||||||||||||||||||| ||||||||||||||
Sbjct: 800 aaaaccaagctgcgcgggggcggcctaatgcgcgtgcg 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_k05.g1 MSMg01no538_k05.g1 CHROMAT_FILE:
MSMg01no538_k05.g1 PHD_FILE: MSMg01no538_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:20 2005
(520 letters)
>mm_chr1_134271817_134272736
Length = 920
Score = 590 bits (305), Expect = e-173
Identities = 318/327 (97%), Gaps = 9/327 (2%)
Strand = Plus / Minus
Query: 195 aagatttaacttttgctatctatctatctatctatctatctatctatctatctatctatc 254
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 920 aagatttaacttttg--------ctatctatctatctatctatctatctatctatctatc 869
Query: 255 tatctatctatctatctatctatctatctatctatctatctattggcagggtctcactgt 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 tatctatctatctatctatctatctatctatctatctatctattggcagggtctcactgt 809
Query: 315 gtagccttaggtagaacttactatatgaa-ccagatctaccggcctctgccttcctggaa 373
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 808 gtagccttaggtagaacttactatatgaacccagatctaccggcctctgccttcctggaa 749
Query: 374 ttaaaggtgtatgccgccaagcctggcttcttatctctgttctgatttggaactgtgagc 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ttaaaggtgtatgccgccaagcctggcttcttatctctgttctgatttggaactgtgagc 689
Query: 434 tcggctgctgtgagcctggtccaccttcacaacaaaccatgaggctggcagagcagatgc 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tcggctgctgtgagcctggtccaccttcacaacaaaccatgaggctggcagagcagatgc 629
Query: 494 ttccatttcataagtgaaaactaagtc 520
|||||||||||||||||||||||||||
Sbjct: 628 ttccatttcataagtgaaaactaagtc 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
