XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCA
AATGAGGGAAAACTTGGCATAGACTCATGACAAAAACAAAGATCAGCAAT
GAACAAGCTGATTTAAAAGGGGTTAATTACAGGCCTAGTAGAAAACTTAG
CCCCACTTAGTGAATGTTAATAACATTATCCCAAAGGTAGTCACTTCGTT
AAAAATTCAAAGCGCAGAAGGAGAGCTGACCTGTTGTGTATTCTTCTATT
CACATGGCTTCCACTGGGAAACACATTCAGAGAAAACCCACCAGTGTGTG
TCAGAATGTTGTGGTCATTATTTAACATTAAGGACTGAGATATAGCAGTG
GTGTGGAGTCCAACACCAGTAATGCAAGAAAATTACTAAAGGCTGCAAAT
ACCAACTTGCATTCAGACAGCCTTGCAGCAAGGGTGGGTGAGCCAGGCTG
CAGAGCCTGGTAACCCAGCCTACCTGTCAAGGTCAACTCTCTGTTTATTG
TGTCATTGAACAAGGCTCCTCTTTGGGTCCTGAGTCTCATCCATAGGATG
GAGCAGCCAATACTTGCTTCATGGGCAATATCTTCTAATAACTTCAGATG
TACAAGGATTTGGTATAAAATATGTCATGGATATTATTTTATTCTCTCCA
TCCCTACCTTTCCTTCCAGAGATAACTAATGGTAGACATGAAAAACATGT
TACAGACATTGGCGTTATTACTATTATTGCTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCATAAAGTCTTTAATTTCTTTCATTATTTCTCCCCTG
ACCGAGAGATCATTGAGTAGAGAGTTTTTCAGTTTTCATGAGTATGTGGA
TTTTCTGTTGTTTATGTTGTTGTTAAAGTCCAAGTTTAATCCATGGTGGT
CTGATAAGATGCAAAGGGTTATTTCAATGTTTTTTTTATCTGTTGAGGCT
TGCTTTGTGACTGAGTATATGGTCAGTTTTGGGGAATGTTTCATGAGGTG
CTGAGAAGAAAGTATGTTCTTTTGTATTTGGGTGAAATATTCTGTAGATA
TCTGTTAGGTCTATTTGGTTTATAATATCTGTTAGTTCAATTATTTCTCC
GTTTAGTAGTTTCTTTTCAGATGACCGGTCCATTGGTGACAGTGGGAGGT
TGAAGTCCCCACTATTATTGTGCAGGGTTTGATGTGTGATTTAAGCTCTA
GTAATGTTTCCTTTACAAATGTGAGTGTTTTTATATCTGAGGCATAGATG
TTCAGATTTGAGATGTCATCTTGGTGTATTTTTTTCTTTGATGAGTTTGA
AGTGTCTGTTCCCATCGCTTTTCACTTACTTTTGGTTGAAAGTCTATTTT
ATTTGATATTGGAATGGTGATGCCCGCTTGTTTCTTGGGTCTGTTTGCCT
AGAAAACCTTTCCAGGCATTTACTCTGTGATAGTGGCTA

Query= MSMg01no538_k15.b1 MSMg01no538_k15.b1 CHROMAT_FILE:
MSMg01no538_k15.b1 PHD_FILE: MSMg01no538_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:22 2005
         (560 letters)



>mm_chr1_80580154_80581113
          Length = 960

 Score = 1027 bits (531), Expect = 0.0
 Identities = 549/555 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcaaatgagggaaaacttggcatagactcatgacaaaaacaaagatcagcaat 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gaattcctcaaaggagggaaaacttggcatagactcatgacaaaaacaaagatcagcaat 700

                                                                       
Query: 65  gaacaagctgatttaaaaggggttaattacaggcctagtagaaaacttagccccacttag 124
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gaacaagctgatttaaaagggcttaattacaggcctagtagaaaacttagccccacttag 640

                                                                       
Query: 125 tgaatgttaataacattatcccaaaggtagtcacttcgttaaaaattcaaagcgcagaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tgaatgttaataacattatcccaaaggtagtcacttcgttaaaaattcaaagcgcagaag 580

                                                                       
Query: 185 gagagctgacctgttgtgtattcttctattcacatggcttccactgggaaacacattcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gagagctgacctgttgtgtattcttctattcacatggcttccactgggaaacacattcag 520

                                                                       
Query: 245 agaaaacccaccagtgtgtgtcagaatgttgtggtcattatttaacattaaggactgaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agaaaacccaccagtgtgtgtcagaatgttgtggtcattatttaacattaaggactgaga 460

                                                                       
Query: 305 tatagcagtggtgtggagtccaacaccagtaatgcaagaaaattactaaaggctgcaaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 459 tatagcagtggtgtggagtccaacaccagtaatgcaagaaaattactgaaggctgcaagt 400

                                                                       
Query: 365 accaacttgcattcagacagccttgcagcaagggtgggtgagccaggctgcagagcctgg 424
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 399 accaacttgcattcagacagtcttgcagcaagggtgggtgagccaggctgcagagcctgg 340

                                                                       
Query: 425 taacccagcctacctgtcaaggtcaactctctgtttattgtgtcattgaacaaggctcct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 taacccagcctacctgtcaaggtcaactctctgtttattgtgtcattgaacaaggctcct 280

                                                                       
Query: 485 ctttgggtcctgagtctcatccataggatggagcagccaatacttgcttcatgggcaata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ctttgggtcctgagtctcatccataggatggagcagccaatacttgcttcatgggcaata 220

                          
Query: 545 tcttctaataacttc 559
           ||||||| |||||||
Sbjct: 219 tcttctactaacttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)