BAC Information

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BAC

Clone NameMSMg01-538L04
Chromosome1 (Build37)
Map Location 90,244,377 - 90,245,007
singlet/doubletsinglet
Overlap geneTrpm8
Upstream geneTnrc15, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822
Downstream geneSpp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538L04.T7 (MSMg01no538_l04.b1)MSMg01-538L04.TJ (MSMg01no538_l04.g1)
ACCAG605365AG605366
length751753
length of high quality
(start - end)
664 (35 - 698)631 (65 - 695)
definitionCHROMAT_FILE: MSMg01no538_l04.b1 PHD_FILE: MSMg01no538_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:24 2005CHROMAT_FILE: MSMg01no538_l04.g1 PHD_FILE: MSMg01no538_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAACT
GAGGAATATCAAATGTCTGAGAAGCACCTGAAAAGATGTTCAGCATCCTT
AATCATCAGGGAAATGCAAATCAAAACAACCTTGAGATTTCACCTCACAC
CAGTCAGAATAGCTAAGATAAAAAATTCAGGTGACAGCAGATGCTGGCGA
GGATGTGGAGAAAGAGGAACATACCTCCATTGTTGGTGGGATTGCAAGCT
TGTACAACCACTCTGGAAGTCAGTCTGGAGGTTCCTCAGAAAATTGGACA
TAGTACTACTAGAAGATCCAGCAATACCTTTCCTGGGCATATATCCAGAA
GATGTTACAACTAGTAATAAGAACACATGCCCCATTATGTTCATAGCAGC
CTTATTTATAATAGCCAAAAGCTGGAAAGAACCCAGATGTCCCTCAACTG
AGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCA
GCTATTAAAAACAATGAATTTATGAAATTCTTAAGCAAATGGATGGATCT
GGAGAGTATCATCCTGAGTGAGGTAATCCAATCACAAAAGAATTCACATG
ATATCCACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATACCCA
AGATACAATTTGCAAAACACATGAAACTCGAGAAGAAGGAAGACCAAAAT
GTGGATACTTCGTCCCTCCTTAGAATGGGGATCAAAATACCCTTGGAAGG
A
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGGGAATAGGAAAGATGGAGGCAGAGAACTGAATTC
TGGGAATGGGAAAGATGGAGGCAGAGAACTGAATTCAAATAGATAGCCTC
ACTCTTACGTACATGGAGTTCCACATCCAAGTCCTCCCTGCTGCTTCTGT
CCTCTTTCCAGAAGCTTCGACGGAAGTTTGCCACCAACTTCCACACAAAG
GTGAGGAGTGCATCATTGTAGGAGTTCTTGGCGATCTGCAGATTCCGGTA
CACTAGGGTGCTGAAGTGGGTGGAGAAGAGCTCTGTGAGGACTTCATTGG
TGAGAAACTTCTGCAGATTCAGGCCATTCTCCAGAAAGAGGCGGACAAAC
TTGGGTCTGTCCTTTATGAGAGCCGTGAACATGACCTCCTGAAGGTCGGC
AGACTAAAGAGACAGAAGAGAGGAGAGCTCATACCACAAGGCCAACGAAG
AAAACACTAAGTCTCTGCATTCCGGCCACAACATCCTAGCATCTTCAGCG
TCTCTCTCCATCCTGCTTTGACAATAGAAGTCATATTTTCAGCATCTAGA
CGGGAAAGCAGCAGAGTGGAGCCTTTGAATGTGAGAACGTACTTTGAATA
CGAAGGTACTTATGTGGTGACAGCACGCCCACTTAAGCATGACATGGGTC
AGGAAACAACTTTGGCAGAAAGGGCATCAGGGAAGAGAAGCCACCAGTGG
GAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_l04.g1 MSMg01no538_l04.g1 CHROMAT_FILE:
MSMg01no538_l04.g1 PHD_FILE: MSMg01no538_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:24 2005
         (631 letters)



>mm_chr1_90244177_90245207
          Length = 1031

 Score = 1166 bits (603), Expect = 0.0
 Identities = 624/631 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggaataggaaagatggaggcagagaactgaattctgggaatgggaaagatggaggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 tgggaataggaaagatggaggcagagaactgaattctgggaatgggaaagatggaggcag 772

                                                                       
Query: 61  agaactgaattcaaatagatagcctcactcttacgtacatggagttccacatccaagtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 agaactgaattcaaatagatagcctcactcttacgtacatggagttccacatccaagtcc 712

                                                                       
Query: 121 tccctgctgcttctgtcctctttccagaagcttcgacggaagtttgccaccaacttccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 711 tccctgctgcttctgtcctctttccagaagcttcgacggaagtttgccaccaacttccag 652

                                                                       
Query: 181 acaaaggtgaggagtgcatcattgtaggagttcttggcgatctgcagattccggtacact 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 acaaaggtgaggagtgcgtcattgtaggagttcttggcgatctgcagattccggtacact 592

                                                                       
Query: 241 agggtgctgaagtgggtggagaagagctctgtgaggacttcattggtgagaaacttctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agggtgctgaagtgggtggagaagagctctgtgaggacttcattggtgagaaacttctgc 532

                                                                       
Query: 301 agattcaggccattctccagaaagaggcggacaaacttgggtctgtcctttatgagagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 agattcaggccattctccagaaagaggcggacaaacttgggtctgtcctttatgagagcc 472

                                                                       
Query: 361 gtgaacatgacctcctgaaggtcggcagactaaagagacagaagagaggagagctcatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gtgaacatgacctcctgaaggtcggcagactaaagagacagaagagaggagagctcatac 412

                                                                       
Query: 421 cacaaggccaacgaagaaaacactaagtctctgcattccggccacaacatcctagcatct 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 411 cacaaggccaacgaagaaaacactaagtctctgcattccagccacaacatcctagcatct 352

                                                                       
Query: 481 tcagcgtctctctccatcctgctttgacaatagaagtcatattttcagcatctagacggg 540
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 351 tcagcgtctctctccatcctgctttgacaatagaattcatattttcagcatctagacggg 292

                                                                       
Query: 541 aaagcagcagagtggagcctttgaatgtgagaacgtactttgaatacgaaggtacttatg 600
           ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| 
Sbjct: 291 aaagcagcagagtggagcctttgaatgtgggaacgcactttgaatacgaaggtacttata 232

                                          
Query: 601 tggtgacagcacgcccacttaagcatgacat 631
           |||||||||||||||||||||||||||||||
Sbjct: 231 tggtgacagcacgcccacttaagcatgacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)