BAC Information

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BAC

Clone NameMSMg01-539D08
Chromosome1 (Build37)
Map Location 72,765,247 - 72,765,711
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a
Downstream geneIgfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539D08.T7 (MSMg01no539_d08.b1)MSMg01-539D08.TJ (MSMg01no539_d08.g1)
ACCAG605755AG605756
length749743
length of high quality
(start - end)
668 (76 - 743)438 (79 - 516)
definitionCHROMAT_FILE: MSMg01no539_d08.b1 PHD_FILE: MSMg01no539_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:04 2005CHROMAT_FILE: MSMg01no539_d08.g1 PHD_FILE: MSMg01no539_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTCCTCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCACCTGACCGAAACTGAATGGCTGAGAAGCACCTGAA
AAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAATAACAC
TGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGAT
GACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGATTGCAACCTTGTACAACCACTCTGGAAATCAGTCTGGCCGT
TCCTCAGAAAATTGGACATAGTACTACGGGAGTATCCCCCAATACCTCTC
CTGGGCATATATCCAGAAGATGTTCCAATTGGTAAGAAAGACACATGCTC
CACTATGTTCATAGCAGCCTTATTTGTAATAGCCAGAAGCTGGAAAGAAT
CCAGATGCCCCTCTACAGAGGAATGGATACAAAAATGTGGTACATTTACA
CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTT
GGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAGCCCAATC
ACAAAAGAACTCAAATGATATGTACTCACTGATAAGTGGATATTAGCTCA
GAAACTTAGAATACCCAAGATATAAGATACAATTTTTGAAACACATGAAA
CTCAAGAAGAATGAAAACCAAAGTGTGGACACTTTGCCCTGTCTTAGAA
CGTACGATGCTATGTGTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCCCTTTTATAGATGACA
AAACCTCTAAGATTTTCTACTTGAAGAGAGAGTCATTGAATGGGGAAAGA
ATGAACTCCACAAGGAGTTCCGTGCTTCAACTTCACCTCCCCGTTCACTG
GCTTGGGCAACAGAAGAGCTTTGTTCTCTATAGATAAAGAAACCAAGGTA
CAGAGTGGTATCTGTGAGGGGTTTTGATGGTTGGAGGCCAGTCTCAGCAA
GTGATAAGTATATAACGCTAAAAGGCCACTACAGACAGGCTGGAGAGAAA
GTGCCACTAGGATTCTGCTGATTAAACCGGGGCAGGCAAAAGGAGCATAG
GTAGTGAACAGCAGGGGGAGCCCTTGCTGAGGCTGAGAGGACTTGGAGGG
ATCAGAGTGCTTCTCTTTCTCCCGCTCTTAACTTTGCTCGGTGCACAGGT
ATGACTTCCCTGATGAGAGTGGTCACAGCACACCAACAGCCCTGCTGCTT
CCAAAGGTCAGTGATATGCGTGCCCTTTCTCCTCAGGAGCGGAGGCCAGC
AAAACCCAGGAACTGAATGACTGAGCACTGGTAATGATCTGCGGGGGGGA
TAAGAAGTGGTGTGAGGATTCCAATCCCTAGCTAGGGCTTTATGATTCCA
AAAGCATCCTTCCTCACGCCAGGTCCCATCACTCTCATCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_d08.g1 MSMg01no539_d08.g1 CHROMAT_FILE:
MSMg01no539_d08.g1 PHD_FILE: MSMg01no539_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:04 2005
         (438 letters)



>mm_chr1_72765074_72765911
          Length = 838

 Score =  721 bits (373), Expect = 0.0
 Identities = 429/467 (91%), Gaps = 31/467 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcccccttttatagatgacaaaacctctaagattttctacttgaagagagagtcattg 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||
Sbjct: 174 tttcccccttttatagatgacaaaaactctaagattttctacttgaagagag--tcattg 231

                                                                       
Query: 61  aatggggaaagaatgaactccacaaggagttccgtgcttcaacttcacctccccgttcac 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 aatggggaaagaatgaagtccacaaggagttccgtgcttcaacttcacctccccgttcac 291

                                                                       
Query: 121 tggcttgggcaacagaagagctttgttctctatagataaagaaaccaaggtacagagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tggcttgggcaacagaagagctttgttctctatagataaagaaaccaaggtacagagtgg 351

                                                                       
Query: 181 tatctgtgaggggttttgatggttggaggccagtctcagcaagtgataagtatataacgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tatctgtgaggggttttgatggttggaggccagtctcagcaagtgataagtatataacgc 411

                                                                       
Query: 241 taaaaggccactacagacaggctggagagaaagtgccacta------------------- 281
           |||||||||||||||||||||||||||||||||||||||||                   
Sbjct: 412 taaaaggccactacagacaggctggagagaaagtgccactacataagacactgttaagaa 471

                                                                       
Query: 282 ----------ggattctgctgattaaaccggggcaggcaaaaggagcataggtagtgaac 331
                     |||||||||||||||| |||||||||||||||||||  ||||||||||||
Sbjct: 472 actgccattgggattctgctgattaacccggggcaggcaaaaggagtgtaggtagtgaac 531

                                                                       
Query: 332 agcagggggagcccttgctgaggctgagaggacttggagggatcagagtgcttctctttc 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 agcagggggagcccttgctgaggctgagaggacttggagggatcagagtgcttctctttc 591

                                                          
Query: 392 tcccgctcttaactttgctcggtgcacaggtatgacttccctgatga 438
           ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 592 tcccgctcttaactttgttccgtgcacaggtatgacttccctgatga 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)