Query= MSMg01no539_f10.b1 MSMg01no539_f10.b1 CHROMAT_FILE:
MSMg01no539_f10.b1 PHD_FILE: MSMg01no539_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:15 2005
(321 letters)
>mm_chr1_56031645_56032365
Length = 721
Score = 567 bits (293), Expect = e-166
Identities = 308/313 (98%), Gaps = 1/313 (0%)
Strand = Plus / Plus
Query: 5 gaattcttagtttcaataatctatgtggcaagcctcacatttgtttacttttgaacggat 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattcttagtttgaataatctatgtggcaagcctcacatttgtttacttttgaaaggat 264
Query: 65 tcgtaaacacggtacatagcagccagggccacatttcaccctagtaagcactatgccttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcgtaaacacggtacatagcagccagggccacatttcaccctagtaagcactatgccttg 324
Query: 125 gaaatggttgattggtttaaggtctgaagttagttcataagatacagtccacagaactca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaatggttgattggtttaaggtctgaagttagttcataagatacagtccacagaactca 384
Query: 185 aaaaggtcaacaagctgaagtgcccaagtgaggatgcctcagtcccacttgggaaggaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaaggtcaacaagctgaagtgcccaagtgaggatgcctcagtcccacttgggaaggaga 444
Query: 245 agaaagaaatcataagtggggagggaggtagagacctgggagggaaagtggaatgggggt 304
|||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 445 agaaagcaatcataagtggggagggaggtagagacctgggaggaaaagtgga-tgggggt 503
Query: 305 ggagggtggggga 317
|||||||||||||
Sbjct: 504 ggagggtggggga 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_f10.g1 MSMg01no539_f10.g1 CHROMAT_FILE:
MSMg01no539_f10.g1 PHD_FILE: MSMg01no539_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:15 2005
(642 letters)
>mm_chr1_56179898_56180939
Length = 1042
Score = 1187 bits (614), Expect = 0.0
Identities = 635/642 (98%), Gaps = 1/642 (0%)
Strand = Plus / Minus
Query: 1 aataaaacacagaaaaacccaaagagagtaggtagatagtaacaatataccagatcttca 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 937 aataaaacacagaaaaacccaaagagagtaggtagatggtaacaatataccagatcttca 878
Query: 61 ggtactgacattctcacacccacactgtaaaaatagctgtaactaccagatagatgcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 ggtactgacattctcacacccacactgtaaaaatagctgtaactaccagatagatgcagg 818
Query: 121 ttgtatttacatatctattgttatatttattattgtattgttaaatgtaaatgtaacaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ttgtatttacatatctattgttatatttattattgtattgttaaatgtaaatgtaacaat 758
Query: 181 taaagatatggaggcaatgaatttgagagcaaggaagggaaggtaaaaagtgcttggaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 taaagatatggaggcaatgaatttgagagcaaggaagggaaggtaaaaagtgcttggaga 698
Query: 241 gaagaaagagtaggaagaataatctaatgttaaaaactaaagaaatttaaaaatataacc 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 697 gaagaaagagtaggaagaataatctaattttaaaaactaaagaaatttaaaaatataacc 638
Query: 301 ttaaatttctccaaagtgtgaaatgataaaaatgtctaatgcaaacctaaaaatgaacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ttaaatttctccaaagtgtgaaatgataaaaatgtctaatgcaaacctaaaaatgaacaa 578
Query: 361 aaacttctagaataccaaaatgaatcaaaaggaagtacacagcatgcatattatatatgt 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 577 aaactcctagaataccaaaatgaatcaaaaggaagtacacagcatgcatattacatatgt 518
Query: 421 atacaagtaaagagaaaattttggaaataaataaaaataattctttttaaaaagagaaat 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 atacaagtaaagagaaaatgttggaaataaataaaaataattctttttaaaaagagaaat 458
Query: 481 gaaaggtacacagagaaaccctgtcatgaaaaaaaaccaacaaaacaaaacaaaaaaaca 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 457 gaaaggtacacagagaaaccctgtcatgaaaaaaaaacaacaaaacaaaacaaaaaa-ca 399
Query: 541 aaaaacaacaacaaaaagagaaatgaaaaaagcaaaggacaatttagaaaaaagaaaagg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aaaaacaacaacaaaaagagaaatgaaaaaagcaaaggacaatttagaaaaaagaaaagg 339
Query: 601 cattgtgagaattgtgcacataaagtgaggaacagaaacaga 642
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cattgtgagaattgtgcacataaagtgaggaacagaaacaga 297
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
