BAC Information

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BAC

Clone NameMSMg01-539N09
Chromosome1 (Build37)
Map Location 105,718,202 - 105,718,346
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539N09.T7 (MSMg01no539_n09.b1)MSMg01-539N09.TJ (MSMg01no539_n09.g1)
ACCAG606232AG606233
length759757
length of high quality
(start - end)
152 (63 - 214)522 (79 - 600)
definitionCHROMAT_FILE: MSMg01no539_n09.b1 PHD_FILE: MSMg01no539_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:55 2005CHROMAT_FILE: MSMg01no539_n09.g1 PHD_FILE: MSMg01no539_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGTTTTTTTTNNNNNNNNNCCCAAAAATTGCGGCCGCTAATAGAATACTA
TTGGAANAGATCCGCGGAATTCCTTTTTCTCCCCCCTCCCTCTTTTCTTT
TCAGATTTTCATTGTCTATGTTACAAACTCTCCTGTTATTTGTATTTCAC
CTTCCTGAGATGTTATTGCTTAACATGACTTGATTTCCTGTTATCATCAC
TCCCTATATAANGACCTTTAGCAAAAATTTCTTCATTCCTCCTATTGTCC
CTACTATTCTCTTTATTGCTGCTTTAAAGGAGNCCAATATAAAGCCTCTT
TTTCCCCTTTCATCCCCAGGAAATTTAAACTTAAATTTGATTTTCAAATT
TTAAACAACCGTTTTCCCTTTTCATTTCCCTTGGGAAACCTTCCAACTTA
AAGGGTCTTTAGAAAAAAAAATGGGCCCCCGGTATTTTACTGGGGGTCCC
CCCTCCCCGGGAAAAAAAAAAAGGGTTAAAACCCTTTTTTTAAAATAAAA
ACCTTTTTTTTTTTTTGTCCTAAAAAAAATTGTTACCCCCCCCGGAATTT
TGTGGGGGGTTTTTTAAAAAAAACAAAATATATTTTTTTTTCTCACAAAA
AAAAAATGTGTGTGGAAAAAAAAAAAAAATATAGGTGTGTATAAACACCC
CATCTTTTTTTTGTGGTGGAAAGAAAAAAAAAAAAAAAGCTTCTTTTTTT
TTTTTTTATTAATNAAAAGGACAAAAATTTTCTTCCCCAAAAAATTTTTT
TTTTTGTTT
CTTCTATATTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCTCCCATTAACATATGACC
CAGAAAATAAAATGCTGGTATATATCTAGATGCATTGGTCTCAGTGTGTT
GATGAGATGATGACATTCAAATTTTTGTTGCAGCATTACGCACAAGTCCC
AAGGCATCATTTCAGCCAAGTGATCATCAAGAAGTCAGCAAACTTATTAT
TTCAGGTTCCTTCCGATCTGTGCCAGTGCCAGGCCACCTTGGGTGCGAAC
TCGGCAGACAGTCCCACAGTCCCCAGAGGACTCTCCATCTCCCAGGCAAC
CTAGCATGCCCAGGATCTTAGGATCACTGGTTAGTAGAAAGCAACATCTG
TTCCAACACCACCAGGAGGGCTGAAGGAGCAGGAACACAGGAACCTTGCC
CAATCAGTGGCTCAGATTCCTTCCAGTCAGTGCTGGTCTATACTTGTTTC
AAATTCAGTGGACAGCCCCATGGCCCTCACAGGAGGTATCACTTCCAGGT
GCTTTAACATGCCAAGGATCTTAGGATCCTAGGATCCCAGGATTCTAGGA
CCTTGGTCATACCAGGATCTCAGGATCTCAGAGGAAGTGTGACTGCCAAG
AATTATGACACACTCATAATGTCAGGTTCACAGAATTCCGGGATCACAGA
TAAACCTGTACTCTGAGGAGTTCTGACCTAACTGGCATTACCAGGAGGAT
AAGCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_n09.b1 MSMg01no539_n09.b1 CHROMAT_FILE:
MSMg01no539_n09.b1 PHD_FILE: MSMg01no539_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:55 2005
         (152 letters)



>mm_chr1_105717999_105718549
          Length = 551

 Score =  267 bits (138), Expect = 2e-76
 Identities = 144/146 (98%), Gaps = 1/146 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctttttctcccccctccctcttttcttttcagattttcattgtctatgttaca 63
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggaattccttttt-gcccccctccctcttttcttttcagattttcattgtctatgttaca 290

                                                                       
Query: 64  aactctcctgttatttgtatttcaccttcctgagatgttattgcttaacatgacttgatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aactctcctgttatttgtatttcaccttcctgagatgttattgcttaacatgacttgatt 230

                                     
Query: 124 tcctgttatcatcactccctatataa 149
           ||||||||||||||||||||||||||
Sbjct: 229 tcctgttatcatcactccctatataa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 551
Length adjustment: 8
Effective length of query: 144
Effective length of database: 543
Effective search space:    78192
Effective search space used:    78192
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)