CTTGCCCTTAGCTCCACACTCGTCCCGCCTCCCGTTCCCCCATGGTCTTA
TGGCCCCGCAACACCCCTCTTTCACACGCTTAAACACTATAACGCTCGCG
ATAACCCTCCTTCCCCCCATCCACCCTGCAAACCAGAAACCAAAAAGTTT
AAAAACCAAAAACCAAAAGATGACCCCATAAAGGTACATCCCCCATCTTC
CTGCAAGAATCCGCGAACCGCGACACTCAACCGTCACACCTTACGCCCAA
TATGACAGCAGCTCAGATTTTCGTTTGGAACGAGCAACACTCCCAAAAAT
TAGTCGGGCTCATACGACATACGTG

NTTCAATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTACAAGCTTTTGCTGTGC
AAACCTTGTTCCTTGATTTAAAACTATTTGTTAAATAAAATTGGCTACAT
GCAATTACTAGAGGGATTAGAGATAGGTGGGTTTTGAATTACCTAGTTGG
GGATAAGAAAAGAGAGAAGGAGGAAGAACAAAAGGAGAAGAGGAAGCTGC
CATGAGGGGAGATACACCATGAGCACGTGGCCAGGAGAAACAGCAAGTAT
CTGGGGTACACTGCTGGGTGGGTAGACGGCCAGCAGTTAGAAAAGTAGAT
TAGAGGTTATCCTCCAGTAATTGTCAAATGCCAAAAATAAAAACAAAAAC
AAAAACAAAAAAAAACAAACAAAACAAAACAACAACAACAACAACAACTC
CTCTAATGGACATAGCTACAAAGACTTCCTAGCTTCACCCTGAGCAGTAA
AGGTCGGTTTGAATGTCAGAGCACTTACCTGTAATGAAACGATCTAATGG
CATCACAGGGGCCACATGAGGAGTAGCTTGTGTAACAAGAAGATTGATCA
GATCTTGCTTAAAATTTTTCAGTGTAAGCAATGCTCTGGCAACAAGGCCA
CCCATTGAGTGACCAATTATTGCCACACTTGTAGGAGNCAATTCTTGACC
CTGTTTTTAAACAAGACACATAAAATAAATCACCATGATAAAATTCTTAG
TATCCTGAGAAAATATTAAGACCTCTGTTTGCTATGAGC

Query= MSMg01no539_o23.g1 MSMg01no539_o23.g1 CHROMAT_FILE:
MSMg01no539_o23.g1 PHD_FILE: MSMg01no539_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:03 2005
         (557 letters)



>mm_chr1_54599232_54600188
          Length = 957

 Score = 1009 bits (522), Expect = 0.0
 Identities = 546/560 (97%), Gaps = 11/560 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttacaagcttttgctgtgcaaaccttgttccttgatttaaaactatttgttaaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tctttacaagcttttgctgtgcaaaccttgttccttgatttaaaactatttgttaaataa 265

                                                                       
Query: 61  aattggctacatgcaattactagagggattagagataggtgggttttgaattacctagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aattggctacatgcaattactagagggattagagataggtgggttttgaattacctagtt 325

                                                                       
Query: 121 ggggataagaaaagagagaaggaggaagaacaaaaggagaagaggaagctgccatgaggg 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 326 ggggataagaaaagagagaaggaggaagaacaaaaggagaggaggaagctgccatgaggg 385

                                                                       
Query: 181 gagatacaccatgagcacgtggccaggagaaacagcaagtatctggggtacactgctggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gagatacaccatgagcacgtggccaggagaaacagcaagtatctggggtacactgctggg 445

                                                                       
Query: 241 tgggtagacggccagcagttagaaaagtagattagaggttatcctccagtaattgtcaaa 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 taggtagacggccagcagttagaaaagtagattagaggttatcctccagtaattgtcaaa 505

                                                                       
Query: 301 tgccaaaaataaaaacaaaaacaaaaacaaaaaaaaacaaacaaaacaaaacaacaacaa 360
           |||||||||||||||||||||||||||        |||||||||||||||||||||||||
Sbjct: 506 tgccaaaaataaaaacaaaaacaaaaa--------aacaaacaaaacaaaacaacaacaa 557

                                                                       
Query: 361 caacaacaac---tcctctaatggacatagctacaaagacttcctagcttcaccctgagc 417
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 caacaacaacaactcctctaatggacatagctacaaagacttcctagcttcaccctgagc 617

                                                                       
Query: 418 agtaaaggtcggtttgaatgtcagagcacttacctgtaatgaaacgatctaatggcatca 477
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agtgaaggtcggtttgaatgtcagagcacttacctgtaatgaaacgatctaatggcatca 677

                                                                       
Query: 478 caggggccacatgaggagtagcttgtgtaacaagaagattgatcagatcttgcttaaaat 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 caggggccacatgaggagtagcttgtgtaacaagaagattgatcagatcttgcttaaaat 737

                               
Query: 538 ttttcagtgtaagcaatgct 557
           ||||||||||||||||||||
Sbjct: 738 ttttcagtgtaagcaatgct 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)