NCCCTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGC
GGAATTCTTTCTCTGCCCGCTGCAGCCCGCAATAGCATAACTGAGCAGTT
CCTAAGCTCGTGGGAGTACTTACGAAGATTCCCTTTTCTCCCAATAAAAA
AATCTATAGCTTAGGGATGCTTCCTTTCTCCCCTTCAGCCAGTGGAGAGT
CTGGGCTTTAAGAGAATCAGGTCCAGAAGGCCACACGTTACCTGTGGCAG
AGCCATGGGCTCAATGGCTCCAGAGCACAAAACCCCTTGGTTCTGGATCT
TCAAGACAACTTGTTAGCCTAAGTTATCTCTAGGCTGAAAGGGGTCTCCT
TTCTGTTGTCTCTGTCCTATTAATACTTGGCCTCCTCGCTTTGCCCCTGT
TTGAGAACGCGCACAGTCATGGATCCTGTGGGAAGCCATCTTTAAAATCC
CTTGCTTCTGTTCTCAATTAGGCAGGCGGGTTTGGATTTTGGTTTTGAAT
TTTGCTTGTTCTTCCTAAATGTTCCAAGTAAGTGGAAAGAAAGATGCTTG
TTACCTCAGTTTCCAGAGATGCTTAATCCTGCTAGGAATGAGGCAAAACC
CACAATATTTTCCCCATCAGCAGCTGTAACTGCTATTTTTGGTCAAACCA
ATCATTGCTATGCTACTGTCTCTTCCAGACATGACCTAACAGCTCTGTTC
TCCAGAGGATATCAAGAGCTGCCTCTCATATACACACAGAGGTCTCTGTA
NGGAAAGTCTGGAAGCCCCAAAG

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTACAACCCCATGGGACAAGGAA
TAGTTGAACGTGCTCATCGCACCTTAAAGAATTGGCTTTTTAAGACAAAA
GAGGGTCAGCTATATCCCCCAAGGTCACCAAAGGCCCACCTTGCCTTCAC
TTTATTTGTCCTAAATTTCTTGCACACCGATATCAAGGGCCAGTCTGCAG
CGGATCGCCACTGGCATCCAGTTACTTCTAATTCTTATGCATTGGTAAAA
TGGAAGGACCCCCTGACTAATGAATGGAAGGGTCCAGATCCAGTTCTAAT
TTGGGGTAGGGGCTCAGTTTGTGTTTTTTCACGAGATGAAGATGGAGCGC
GGTGGCTGCCAGAGAGATTAATTCGTCAGATGAACACAGATTCTGACTCT
TCTGGTAAGTATCATTCTAAAGACTAAAATTCCTTTTGTGCTTAAAATTC
AGCTGAGAGCAACAGCTCTCAAAGCTGTTCTCCAGCTACTCTCTGAACCA
GCTCCCGACAGGAGGCCGGAGACTAGCCTCAGTTTTACAATTTGCATTTG
AATAAAGTACCTAGACTTCCCCGAAAGAAGTTCTGCTTTCCTACTTTCTC
ACTGTCTTTCAAGATTTTGTCTTTCAAGCAGGTAAATCAACACTCTCAAA
GCGGACCAGCGGATGTGCATCCCCGCCCCCCCTAGAGCACACAGGTGGC

Query= MSMg01no539_p14.b1 MSMg01no539_p14.b1 CHROMAT_FILE:
MSMg01no539_p14.b1 PHD_FILE: MSMg01no539_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:06 2005
         (656 letters)



>mm_chr1_39406369_39407423
          Length = 1055

 Score = 1216 bits (629), Expect = 0.0
 Identities = 647/653 (99%), Gaps = 1/653 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctttctctgcccgctgcagcccgcaatagcataactgagcagttcctaagctcgt 63
           |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 204 gaattctttctctgcccgctgcagtccgtaatagcataactgagcagttcctaagctcgt 263

                                                                       
Query: 64  gggagtacttacgaagattcccttttctcccaataaaaaaatctatagcttagggatgct 123
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 gggagtacttacgaagattcccttttctcccaataaaaaa-tctatagcttagggatgct 322

                                                                       
Query: 124 tcctttctccccttcagccagtggagagtctgggctttaagagaatcaggtccagaaggc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcctttctccccttcagccagtggagagtctgggctttaagagaatcaggtccagaaggc 382

                                                                       
Query: 184 cacacgttacctgtggcagagccatgggctcaatggctccagagcacaaaaccccttggt 243
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cacacgttacctgtggcagagtcatgggctcaatggctccagagcacaaaaccccttggt 442

                                                                       
Query: 244 tctggatcttcaagacaacttgttagcctaagttatctctaggctgaaaggggtctcctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tctggatcttcaagacaacttgttagcctaagttatctctaggctgaaaggggtctcctt 502

                                                                       
Query: 304 tctgttgtctctgtcctattaatacttggcctcctcgctttgcccctgtttgagaacgcg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tctgttgtctctgtcctattaatacttggcctcctcgctttgcccctgtttgagaacgcg 562

                                                                       
Query: 364 cacagtcatggatcctgtgggaagccatctttaaaatcccttgcttctgttctcaattag 423
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 563 cacagtcatggatcctgtgggaagccatctttaaaatcccctgcttctgttctcaattag 622

                                                                       
Query: 424 gcaggcgggtttggattttggttttgaattttgcttgttcttcctaaatgttccaagtaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gcaggcgggtttggattttggttttgaattttgcttgttcttcctaaatgttccaagtaa 682

                                                                       
Query: 484 gtggaaagaaagatgcttgttacctcagtttccagagatgcttaatcctgctaggaatga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtggaaagaaagatgcttgttacctcagtttccagagatgcttaatcctgctaggaatga 742

                                                                       
Query: 544 ggcaaaacccacaatattttccccatcagcagctgtaactgctatttttggtcaaaccaa 603
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 743 ggcaaaacccacaatattttccccaccagcagctgtaactgctatttttggtcaaaccaa 802

                                                                
Query: 604 tcattgctatgctactgtctcttccagacatgacctaacagctctgttctcca 656
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tcattgctatgctactgtctcttccagacatgacctaacagctctgttctcca 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1055
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1045
Effective search space:   675070
Effective search space used:   675070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)