Query= MSMg01no540_e03.b1 MSMg01no540_e03.b1 CHROMAT_FILE:
MSMg01no540_e03.b1 PHD_FILE: MSMg01no540_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:28 2005
(675 letters)
>mm_chr1_189450997_189452071
Length = 1075
Score = 1284 bits (664), Expect = 0.0
Identities = 670/672 (99%)
Strand = Plus / Minus
Query: 4 ggaattcttctaatatccagtggatgaatgggcaacttggcagcagactcacttccaacc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 ggaattcttctaatatccagtggatgaatgggcaacttggcagcagactcacttccaacc 816
Query: 64 cacagaacagtaattttgaagatttttctcaatggcaatttttacatacatgaatgaaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 cacagaacagtaattttgaagatttttctcaatggcaatttttacatacatgaatgaaag 756
Query: 124 atttattagtgtttttctccctaagatcctgatatcctatgcagtctgctaaagtgtctg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 atttattagtgtttttctccctaagatcctgatatcctatgcagtctgctaaagtgtctg 696
Query: 184 gattctaggtagacattaaagataaaatagattaagataggtacttttccattttatgga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gattctaggtagacattaaagataaaatagattaagataggtacttttccattttatgga 636
Query: 244 tataaatatcttaattaccttgagaggaatgcataaagccataaagccatcaccgtggtt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tataaatatcttaattaccttgagaggaatgcataaagccataaagccatcaccgtggtt 576
Query: 304 aatagtgattgctggcagctcctaactctggttgtcatcacactggcaaagtcccagata 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aatagtgattgctggcagctcctaactctggttgtcatcacactggcaaagtcccagata 516
Query: 364 gagtataacaattttctactaattcagaccaaactaataacagcccataaggttcttgac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gagtataacaattttctactaattcagaccaaactaataacagcccataaggttcttgac 456
Query: 424 atgtttagggcgaatgctctgcagtatctaccggacttgcaggcaaggtctcatccaaag 483
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 455 atgtttagggcgaatgctctgcagtacctaccggacttgcaggcaaggtctcatccaaag 396
Query: 484 gctagacgtgatgcccacttgaaatatagcataataacatgcaggtgacatcaagtctta 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gctagacgtgatgcccacttgaaatatagcataataacatgcaggtgacatcaagtctta 336
Query: 544 gaaagttatggggaacgcagttccctccaccacccctcatattttaagactcattctgtt 603
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gaaagttatggggaatgcagttccctccaccacccctcatattttaagactcattctgtt 276
Query: 604 cagatatgtttttgaagtctagcatgttttctcttcttacttagatggtgtggatgaagg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cagatatgtttttgaagtctagcatgttttctcttcttacttagatggtgtggatgaagg 216
Query: 664 gcagaaaatcag 675
||||||||||||
Sbjct: 215 gcagaaaatcag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_e03.g1 MSMg01no540_e03.g1 CHROMAT_FILE:
MSMg01no540_e03.g1 PHD_FILE: MSMg01no540_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:28 2005
(607 letters)
>mm_chr1_189272041_189273044
Length = 1004
Score = 1087 bits (562), Expect = 0.0
Identities = 595/608 (97%), Gaps = 5/608 (0%)
Strand = Plus / Plus
Query: 1 cgaaggcttggaagctgcttccaaaagcatttaataggtggcagggcctcagaggcccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgaaggcttggaagctgcttccaaaagcatttaataggtggcagggcctcagaggcccac 260
Query: 61 agctgtcccctgtcagaaacgccctttgctgctctgctctcttggagaattccatttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgtcccctgtcagaaacgccctttgctgctctgctctcttggagaattccatttctt 320
Query: 121 tcatgttgggctaaagcagcctgagacttcttaaggtgaaactcaaacagtttaacagtt 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 tcatgttgggctaaagcagcctgagacgtcttaaggtgaaactcaaacagtttaacagtt 380
Query: 181 actcatgagggtcaggtcgatgggggggggttggatggaaaggggaacagagagctatgg 240
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 actcatgagggtcaggtcgatggggg----ttggatggaaaggggaacagagagctatgg 436
Query: 241 ttttaatggggctaaatttctcttgtggggagatgggaaagttccggagactcatagtgg 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 437 ttttaatggggctaaatttctcttgtggggagatgggaaagttccagagactcatagtgg 496
Query: 301 gaatggcagtcacactacaagatgaatatgctcaataccacgaacagtgtgtgcaaaaa- 359
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 497 gaatggcggtcacactacaagatgaatatgctcaataccacgaagagtgtgtgcaaaaaa 556
Query: 360 tggcaaaatggtagatttttatggttcatgttaccgcagtcagaaatgtggaatggaaga 419
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 557 tggcaaaatggtagatttttatggttcatgttaccgcagtcacaaatgtggaatcgaaga 616
Query: 420 gactcaaagtctaaacatgttggtggattaaaataccggactcctgaagcaaggctatgc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gactcaaagtctaaacatgttggtggattaaaataccggactcctgaagcaaggctatgc 676
Query: 480 tagcacgcttagggacatctttggaggcttgcagatggggttgaacctctgtagtcaagc 539
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 677 tagcacgcttagggacaactttggaggcttgcagatggggttgaacctctgcagtcaagc 736
Query: 540 atcctgcaaactgagcctctgtgggaaacactcttggagaaagccgaaactgcaaatggg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 atcctgcaaactgagcctctgtgggaaacactcttggagaaagccgaaactgcaaatggg 796
Query: 600 gaacctga 607
||||||||
Sbjct: 797 gaacctga 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1004
Length adjustment: 10
Effective length of query: 597
Effective length of database: 994
Effective search space: 593418
Effective search space used: 593418
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
