Query= MSMg01no540_f03.b1 MSMg01no540_f03.b1 CHROMAT_FILE:
MSMg01no540_f03.b1 PHD_FILE: MSMg01no540_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:33 2005
(652 letters)
>mm_chr1_179775106_179776156
Length = 1051
Score = 1218 bits (630), Expect = 0.0
Identities = 646/654 (98%), Gaps = 6/654 (0%)
Strand = Plus / Plus
Query: 5 gaattctgggactatggacgtataccattccaaccaacctctaccttatttttcttttc- 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaattctgggactatggacgtataccattccaaccaacctctaccttatttttcttttct 257
Query: 64 ttttttttttaatgtgaaatacttttattaaaaaatgatcaaatctttctgtaatactaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttttttttttaatgtgaaatacttttattaaaaaatgatcaaatctttctgtaatactaa 317
Query: 124 ttaacatatagtataaaaatcagtctaatatctttgtcagaaataccttttagaaagaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttaacatatagtataaaaatcagtctaatatctttgtcagaaataccttttagaaagaat 377
Query: 184 ttatttttccccagaacatttgaattatatacacacttatgctaaagctgagaaaatata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttatttttccccagaacatttgaattatatacacacttatgctaaagctgagaaaatata 437
Query: 244 tcagaaggtaaaacgttccaagttttcagccaggcagtggtagcgcatgcctttaatccc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcagaaggtaaaacgttccaagttttcagccaggcagtggtagcgcatgcctttaatccc 497
Query: 304 agcacttgggaggcagaggcaggtggatttctgagttcgaggccagcctggtctaaaaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agcacttgggaggcagaggcaggtggatttctgagttcgaggccagcctggtctaaaaag 557
Query: 364 tgagttccaggacagccagagctatactgagaaaccctgtcttgaaaaaacaaacaaaca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgagttccaggacagccagagctatactgagaaaccctgtcttgaaaaaacaaacaaaca 617
Query: 424 aaaacaaaacaaa-----gttccaaattttcacaaaacttaaaaaaccaattaaagtaaa 478
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaaacaaaacaaaacaaagttccaaattttcacaaaacttaaaaaaccaattaaagtaaa 677
Query: 479 tgtgaattttaaaatgtttcaatctaatacttgctgtataagtatacttatgataattat 538
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgtgaattttaaaatgttgcaatctaatacttgctgtataagtatacttatgataattat 737
Query: 539 gaatagtacagggtttagtctttgaaattcagctgataatatgaatatactgatgaatga 598
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gaatagtacagggtttattctttgaaattcagctgataatatgaatatactgatgaatga 797
Query: 599 tgatgatgatgatgatgataatgtaaacctgaacatactggcagcttttggtaa 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tgatgatgatgatgatgataatgtaaacctgaacatactggcagcttttggtaa 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1051
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1041
Effective search space: 668322
Effective search space used: 668322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_f03.g1 MSMg01no540_f03.g1 CHROMAT_FILE:
MSMg01no540_f03.g1 PHD_FILE: MSMg01no540_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:33 2005
(635 letters)
>mm_chr1_179811053_179812093
Length = 1041
Score = 1046 bits (541), Expect = 0.0
Identities = 561/571 (98%), Gaps = 6/571 (1%)
Strand = Plus / Minus
Query: 71 taagaaaaaaaagtgtttacaagctggtaggatcactcattggttaagagcactgactgt 130
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 taagaaaaaaaagtgtttacgagctggtaggatcactcattggttaagagcactgactgt 982
Query: 131 tcttctgagttcaaatcccagcaaccatatggtggctcacactcataagtaatgagatct 190
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 981 tcttctgagttcaaatcccagcaaccatatggtggctcacactcatcagtaatgagatct 922
Query: 191 gatgccctcttctggtgtgtctgaagacagctacagtgtacttacatataacaataaata 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gatgccctcttctggtgtgtctgaagacagctacagtgtacttacatataacaataaata 862
Query: 251 aatcttaaaacaaacaaaaagtgtttacattttaaaggtgaaatattaatttctcacata 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aatcttaaaacaaacaaaaagtgtttacattttaaaggtgaaatattaatttctcacata 802
Query: 311 tcgagacatgcaaaggatttgaaatttggagacctaaaaggatggaagttcatttaattg 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcgagacatgcaaaggatttgaaatttggagacctaaaaggatggaagttcatttaattg 742
Query: 371 aaaaaaaagatatatatcaaatatcaaataacatttaaaagcaatacttactgtaactga 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaaaaaaagatatatatcaaatatcaaataacatttaaaagcaatacttactgtaactga 682
Query: 431 taataattatccactaattcgtaatttgttgtctgaaaaaatcttgttatctgaaaagaa 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taataattatccactaattcgtaatttgttgtctgaaaaaatcttgttatctgaaaagaa 622
Query: 491 aattgaaaagtttgtgtagagcagaaaaggtagaaatttgatctcatattagtatcatat 550
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 621 aattgaaaagtttgtgtagagcagaaaaggcagaaatttgatctcatattagtattatat 562
Query: 551 aggtttgtag------gttcactagaccactggctcacagtgctcattcctacaaactca 604
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtttgtagatcaaggttcactagaccactggctcacagtgctcattcctacaaactca 502
Query: 605 ctgtatgctttgagatatttaaatcttgagt 635
|||||||||||||||||||||||||||||||
Sbjct: 501 ctgtatgctttgagatatttaaatcttgagt 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1041
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1031
Effective search space: 644375
Effective search space used: 644375
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
