NNNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTATTACTTCCTGCCATTATCATGATACAGAATCACTGTTA
GTTTAAAAATTCTTTAAAATAGAGTAGACTAAGAAGGTGGAAAGATTAAA
CTCATAAGATGAATGTGCAAGAAGGGCAGAATTATATACAAGTGGTAAAA
CCAGCCCAATACATAAGACGATTTTGTGTCAATTCCTAAAGACTCAGACT
AATGGACTAAAGTTAAAAGGACAGTCATTTCTGCACAGACTGGTAACTTT
TTATTTGGGGAGGGAAAATGGGTGTTGGGGGATATAAAAATAATTTAATT
TCAAATTAAGTAGATAGTGTCTTACTTAATTAGACAGGTTCAAAGTCAAA
ATCCATTTAGCTTTGTGATGCACTGAGTTTTCTATCACGGGAACAATCAA
TACTAAGCCTAAAGAAATAGAAGATTCTTCATCAGATAGGCTTGACAAGC
TGGTGACCTGCAGTCTTGTCAGTTTTAGGAGTTGAGACATGGCTTCATGC
TTCAGTGGTGTTTGTGAAAATTTATCTTGTTATTCTGTGATGGCTTGCAT
AGCCAGGGTGACAAATCTATTCAACCTTTGTAGGACAATACTTGATCCAA
GTTCACATAACCCAGCTTCCTGAAACCTGGACAGAACACCACACATTTGT
TTTGCTGCCAATTAACTTCAAGATCN

TTATACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAGAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGA
TAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAAT
TTGCTAAACACATGAAACTCAAGAAAAATGG

Query= MSMg01no540_h05.b1 MSMg01no540_h05.b1 CHROMAT_FILE:
MSMg01no540_h05.b1 PHD_FILE: MSMg01no540_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:43 2005
         (670 letters)



>mm_chr1_148623950_148625019
          Length = 1070

 Score = 1054 bits (545), Expect = 0.0
 Identities = 557/561 (99%)
 Strand = Plus / Minus

                                                                        
Query: 110  tgaatgtgcaagaagggcagaattatatacaagtggtaaaaccagcccaatacataagac 169
            |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 tgaatgtgcaagaatgacagaattatatacaagtggtaaaaccagcccaatacataagac 1011

                                                                        
Query: 170  gattttgtgtcaattcctaaagactcagactaatggactaaagttaaaaggacagtcatt 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 gattttgtgtcaattcctaaagactcagactaatggactaaagttaaaaggacagtcatt 951

                                                                        
Query: 230  tctgcacagactggtaactttttatttggggagggaaaatgggtgttgggggatataaaa 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950  tctgcacagactggtaactttttatttggggagggaaaatgggtgttgggggatataaaa 891

                                                                        
Query: 290  ataatttaatttcaaattaagtagatagtgtcttacttaattagacaggttcaaagtcaa 349
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 890  ataatttaatttcaaattaagtagatagtatcttacttaattagacaggttcaaagtcaa 831

                                                                        
Query: 350  aatccatttagctttgtgatgcactgagttttctatcacgggaacaatcaatactaagcc 409
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830  aattcatttagctttgtgatgcactgagttttctatcacgggaacaatcaatactaagcc 771

                                                                        
Query: 410  taaagaaatagaagattcttcatcagataggcttgacaagctggtgacctgcagtcttgt 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770  taaagaaatagaagattcttcatcagataggcttgacaagctggtgacctgcagtcttgt 711

                                                                        
Query: 470  cagttttaggagttgagacatggcttcatgcttcagtggtgtttgtgaaaatttatcttg 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  cagttttaggagttgagacatggcttcatgcttcagtggtgtttgtgaaaatttatcttg 651

                                                                        
Query: 530  ttattctgtgatggcttgcatagccagggtgacaaatctattcaacctttgtaggacaat 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650  ttattctgtgatggcttgcatagccagggtgacaaatctattcaacctttgtaggacaat 591

                                                                        
Query: 590  acttgatccaagttcacataacccagcttcctgaaacctggacagaacaccacacatttg 649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590  acttgatccaagttcacataacccagcttcctgaaacctggacagaacaccacacatttg 531

                                 
Query: 650  ttttgctgccaattaacttca 670
            |||||||||||||||||||||
Sbjct: 530  ttttgctgccaattaacttca 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)