NNNCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATC
CGCGGAATTCTCTGATCTTCTAAAAGCTCTAGAAGTAATGTCAAGTAATG
ACAAATGGAATTGGATCACATTTTACAGCTTCTGTTCAATGAAAGAAATT
ATCAGTGGAGTGAAGAGATGCTGTTTGCCAATGGGAAATCTGACCCGATT
AATATCTAGATGGGACAAAACAAAATATCCACTTAGTAAATAAGCAAATA
AGTTGAACTAACAGTTCTCAAAAGAAGAAATACAAATAGCCAATGGATAT
ATGAAAAAAGGTTCAACATCCTTTAGTTATTAGGGAAATGAGAAGTAAAA
CTTGTTTGTCATTTTATCTCATTCTGCTCAGAATGGCCATCCTCAAGAAA
CTAGATAAGAAATGATGGTGAGGATATGGGAAAAGTGGAGCCTTTATTCA
CATCTTCTGAGAATATGAATCGTTACAGTCTCTGTGAAAATCAGTATGTG
GGTTCCTTGAATATTAAACTACCACATGACCCAGCTATTCCACAGATTAA
TATATACTTTAACCACTTGATGCCAGTTCAATATATCACAGATATGCTTT
CATTTTATTGTTATTTTGTTAATATATTATTAATAAATGTACATTATTAT
ATTTATTATTGCTATACTGTTTACAATAGCCCAGATATGGAGCCAGCCTA
GATGCCCATCAACAGATAGATAGATAGATAGATAGATN

TTTTTAGATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTCGAAAATGAGGATCTACACTGGGACCCCA
TCCTAAGAGTCTTGTACAATGTCTAGACATTCCAAGTCCCACCAGAGAGC
GACAGGCACAGAAACAGTACTCTGTGTAGTGACTCTCGCACAGGACATGT
GCCCTGCTGTGGAAAGGGTGCTGAGATGGCTCGTGACAGGTCTCAGGTGG
GGCCCTTGTTCTCCATGCTCCTTCTCCAGGGTCTCAGAAGCAAGAATATG
TGATGCCCAGTAGGGCCCCCTGGGAACCATTTAATCTGCTGATGCCATGG
GAAGAAGGTTCTAGACTCTCCCTCCTTCAGAAGTACATGCTGAGCACCGT
GGGCATCTTCTGTGCTGTTTGATGAATTGTTTTCTCCCCAGGGCGCTAGG
TAACACTGAACTTCTTACCGCCTTTAGTGCTGGATCCAGGATGGGTCCTT
CCGGGGAGGAGGAGGAGGGGAGCAGAGCCAGTAGTGAGGGCTCTTCCCTC
CACACAACCCCAGCCCTGGGGCATTCCCTGCTGGGGAACAGTAGTCAGTG
ACTTTGCTCCACTACAGTGGTAGTGGTGGTGGGTACAGGAGCCTTTCAGC
CACGACTTCGTGCCCAGCCATGCAAACTGGCATTGCGGGCTGCTCCTGTT
CTGGTTCTCGCCAAGGCTTCTGTGGG

Query= MSMg01no540_h06.g1 MSMg01no540_h06.g1 CHROMAT_FILE:
MSMg01no540_h06.g1 PHD_FILE: MSMg01no540_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:44 2005
         (564 letters)



>mm_chr1_121403288_121404251
          Length = 964

 Score = 1009 bits (522), Expect = 0.0
 Identities = 552/562 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   tacactgggaccccatcctaagagtcttgtacaatgtctagacattccaagtcccaccag 62
           |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 203 tacactgggaccccatcctaagagtcttgttcaaggtctagacattccaagtcccaccag 262

                                                                       
Query: 63  agagcgacaggcacagaaacagtactctgtgtagtgactctcgcacaggacatgtgccct 122
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 263 agagcgacaggcacagaaacagcactctgtgtagtgactctcgcacaggacatgtgccct 322

                                                                       
Query: 123 gctgtggaaagggtgctgagatggctcgtgacaggtctcaggtggggcccttgttctcca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gctgtggaaagggtgctgagatggctcgtgacaggtctcaggtggggcccttgttctcca 382

                                                                       
Query: 183 tgctccttctccagggtctcagaagcaagaatatgtgatgcccagtagggccccctggga 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgctccttctccagggtctcagaagcaagaatatgtgatgcccagtagggccccctggga 442

                                                                       
Query: 243 accatttaatctgctgatgccatgggaagaaggttctagactctccctccttcagaagta 302
           ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 443 accatttaacctgctgatgccatgggaagaaggttctagacactccctccttcagaagta 502

                                                                       
Query: 303 catgctgagcaccgtgggcatcttctgtgctgtttgatgaattgttttctccccagggcg 362
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 503 cgtgctgagcaccgtgggcatcttctgtgctgtttgatgaattgttttctccccagggtg 562

                                                                       
Query: 363 ctaggtaacactgaacttcttaccgcctttagtgctggatccaggatgggtccttccggg 422
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 563 ctaggtaacactgaacttcttatcgcctttagtgctggatccaggatgggtccttccagg 622

                                                                       
Query: 423 gaggaggaggaggggagcagagccagtagtgagggctcttccctccacacaaccccagcc 482
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 623 gaggaggaggaggggagcagagccagtagtgggggctcttccctccacacaaccccagcc 682

                                                                       
Query: 483 ctggggcattccctgctggggaacagtagtcagtgactttgctccactacagtggtagtg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctggggcattccctgctggggaacagtagtcagtgactttgctccactacagtggtagtg 742

                                 
Query: 543 gtggtgggtacaggagcctttc 564
           ||||||||||||||||||||||
Sbjct: 743 gtggtgggtacaggagcctttc 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)