Query= MSMg01no540_h08.b1 MSMg01no540_h08.b1 CHROMAT_FILE:
MSMg01no540_h08.b1 PHD_FILE: MSMg01no540_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:44 2005
(659 letters)
>mm_chr1_129946533_129947591
Length = 1059
Score = 880 bits (455), Expect = 0.0
Identities = 466/470 (99%)
Strand = Plus / Minus
Query: 189 ggcaggagctggaagcacctccttacattgtgacacagtcaagggtggagagaagttagt 248
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1059 ggcaggagctggaagcacctccttacattgtgacacagtcaagggtggagagaagtcagt 1000
Query: 249 gcatattttcctttccttgtgtgtgttctgttatcctaaggtttagcatctcctcccagg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 gcatattttcctttccttgtgtgtgttctgttatcctaaggtttagcatctcctcccagg 940
Query: 309 ggatggtgccccttcccactgggggctggttctttccgtgtccgtgaccaatgaccacag 368
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 939 ggatggtgccccttcccactgggtgctggttctttccgtgtccgtgaccaatgaccacag 880
Query: 369 cccccttcaaacatgcacagaccaacctgatctgaacagattcccaattaggcctctttc 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 cccccttcaaacatgcacagaccaacctgatctgaacagattcccaattaggcctctttc 820
Query: 429 cacattgttctaatgtgtgttagattgactgttgagattaaccaccatgttaacctattc 488
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 819 cacattgttctaatgtgtgttagattgactgttgagattaaccaccatggtaacctattc 760
Query: 489 atattcctttacatacagagaaaacaactatattgtttggacccaaaaacatactttggt 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 atattcctttacatacagagaaaacaactatattgtttggacccaaaaacatactttggt 700
Query: 549 atggagtggtttgaggtaaaaataaaatctttacaaatttgaaatttaatttaaggagta 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 atggagtggtttgaggtaaaaataaaatctttacaaatttgaaatttaatttaaggagta 640
Query: 609 tttaaaaggcattgatgattttctcttccttttctttangcatccggttt 658
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 639 tttaaaaggcattgatgattttctcttccttttctttaggcatccggttt 590
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_h08.g1 MSMg01no540_h08.g1 CHROMAT_FILE:
MSMg01no540_h08.g1 PHD_FILE: MSMg01no540_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:44 2005
(609 letters)
>mm_chr1_129783581_129784589
Length = 1009
Score = 1054 bits (545), Expect = 0.0
Identities = 585/609 (96%), Gaps = 17/609 (2%)
Strand = Plus / Plus
Query: 1 accttctccctctggagggtaaccaagggcaacagcagtaggctctatgtcttggaagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 accttctccctctggagggtaaccaagggcaacagcagtaggctctatgtcttggaagtc 277
Query: 61 tcttggatagccctgccaacagctcaaaagagggcttcacaagtctggtggtattggggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tcttggatagccctgccaacagctcaaaagagggcttcacaagtctggtggtattggggt 337
Query: 121 ttttgttaggtgttctttggctattggagggaacatcatcagcccacgtgagaaagattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttttgttaggtgttctttggctattggagggaacatcatcagcccacgtgagaaagattc 397
Query: 181 attgaaaatatatgtttgtctatacatttctattgtattacgtaatatatacattatatg 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 attgaaagtatatgtttgtctatacatttctattgtattacgtaatatatacattatatg 457
Query: 241 gtataaacttatattaaggccgggcgtggtggtgcatgcctttaatcccagcactcggga 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gtataaaattatattaaggccgggcgtggtggtgcatgcctttaatcccagcactcggga 517
Query: 301 ggcagaggcaggcagatttctgagttcgaggccagcctggtctacagagtgagttccagg 360
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 518 ggtagaggcaggcagatttctgagttcgaggccagccaggtctacagagtgagttccagg 577
Query: 361 acaaccagggctacacagagaaaccctgtctcgaaaaacaaaaaaacaaaacaaacaaaa 420
||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 578 acagccagggctacacagagaaacc-----------------aaaacaaaacaaacaaaa 620
Query: 421 attatattaaatgtatgttttaaaagtatattgtatattataaattatattacagatgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attatattaaatgtatgttttaaaagtatattgtatattataaattatattacagatgtg 680
Query: 481 tgtgtgtacagttaatagtatgtttatggtcagttaagatatctttattgttattttcct 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgtgtacagtttatagtatgtttatggtcagttaagatatctttattgttattttcct 740
Query: 541 cacctccccacttctttatttgcctccctcccccttccctaggtgctcccttgtacccat 600
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 741 cacctccccacttctttatttgcctccttcccccttccctaggtgctcccttgtacccat 800
Query: 601 tacctgatt 609
|||||||||
Sbjct: 801 tacctgatt 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
