BAC Information

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BAC

Clone NameMSMg01-540I03
Chromosome1 (Build37)
Map Location 90,225,454 - 90,225,840
singlet/doubletsinglet
Overlap geneTrpm8
Upstream geneTnrc15, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822
Downstream geneSpp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540I03.T7 (MSMg01no540_i03.b1)MSMg01-540I03.TJ (MSMg01no540_i03.g1)
ACCAG606742AG606743
length754719
length of high quality
(start - end)
534 (73 - 606)633 (81 - 713)
definitionCHROMAT_FILE: MSMg01no540_i03.b1 PHD_FILE: MSMg01no540_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:48 2005CHROMAT_FILE: MSMg01no540_i03.g1 PHD_FILE: MSMg01no540_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAACTTAGCAATATCAAATGTCTGAGAAGCACCTGAAAAGAT
GTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCTTGAGA
TTTCACCTCACACCAGTCAGAATAGCTAAGATAAAAAATTCAGGTGACAG
CAGATGCTGGCGAGGATGTGGAGAAAGAGGAACATACCTCCATTGTTGGT
GGGATTGCAAGCTTGTACAACCACTCTGGAAGTCAGTCTGGAGGTTCCTC
AGAAAATTGGACATAGTACTACTAGAAGATCCAGCAATACCTTTCCTGGG
CATATATCCAGAAGATGTTACAACTAGTAATAAGAACACATGCCCCATTA
TGTTCATAGCAGCCTTATTTATAATAGCCAAAAGCTGGAAAGAACCCAGA
TGTCCCTCAACTGAGGAATGGATACAGAAAATGTGGTACATTTACACAAT
GGAGTACTACTCAGCTATTAAAAACAATGAATTTATGAAATTCTTAAGCA
AATGGATGGATCTGGAGAGTATCATCCTGAGTGAGGTAATCCAATCTCAA
AAGAATTCACATGATATCCACTCACTGATAAGTGGATATTAGCCCAGAAA
CTTAGAATACCCTAGATACCATTTGCAAAACACTTGAAACTCGAGAAGAA
CGAAGACCTAAATGTGGATACTTCGTCCCTCCCTTAAATGGGGATCAAAT
ACCC
ATTCTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGACTCTGATCCAGCAA
TGCAAGTTTGTACCTGCAGGTGAACTCTTTTGAGGTGGATTTGGATCGGG
GCTATAAAAACAATGGGTCCAAATCTAACCTGAGTTTGCTGGGGACAGAT
TTTAATGACAAAATACCTAGTAGTTAGCCTATGCTTTGGAGTCCCTTAAG
TATCCCCACGACAACCCTTGTTTTTTAATTGCCAAAAAGGAACTCACTCT
GTGGACCAGGCTGGCCTCGAACTCAGAAATTTGCCTGCCTCTGCCTCCCA
AGTGCTGGGATTAAAGGCGTGAGCCACCACACCTGGCTAAAAATGCTGTT
CTTATAAGGCAGGCTTTCCATGATCTGGCTCCATCACAGAGCCCTAGCCC
TCAGGCCAAGCCCAGTGGTTCTCAACCCCTGGCTCGCAACTTCTTTGAGG
ATCAAACAGTCCTTTCACAGAGGTCACATATTAGATATCCTAGATATCAG
ATGTTTACAATACGATTCCTAACAGTAGCAAAACTATAGTTATGAAGTAG
AACAAAAACAATTTTATGGTTGGGGGTCACCACAGCCATAGCCACTGCCC
TGGTTTTTCTCCCATGTGATCTAGCAGAGCCCCCTTTCTCACCCATACCT
CATCATCACAGTTCCTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_i03.g1 MSMg01no540_i03.g1 CHROMAT_FILE:
MSMg01no540_i03.g1 PHD_FILE: MSMg01no540_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:48 2005
         (633 letters)



>mm_chr1_90225454_90226486
          Length = 1033

 Score =  673 bits (348), Expect = 0.0
 Identities = 378/388 (97%), Gaps = 2/388 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaagactctgatccagcaatgcaagtttgtacctgcaggtgaactcttttgaggtggat 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ccaagactccgatccagcaatgcaagtttgtacctgcaggtgaactcttttgaggtggat 328

                                                                       
Query: 61  ttggatcggggctataaaaacaatgggtccaaatctaacctgagtttgctggggacagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttggatcggggctataaaaacaatgggtccaaatctaacctgagtttgctggggacagat 268

                                                                       
Query: 121 tttaatgacaaaatacctagtagttagcctatgctttggagtcccttaagtatccccacg 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 267 tttaatgacaaaatacctagtagttagcccatgctttggagtcccttaagtatccccgcg 208

                                                                       
Query: 181 acaacccttgttttttaattgccaaaaaggaactcactctgtggaccaggctggcctcga 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 207 acaacccttgttttttaattgccaaaaaggaactcactctgtagaccaggctggcctcga 148

                                                                       
Query: 241 actcagaaatttgcctgcctctgcctcccaagtgctgggattaaaggcgtg-agccacca 299
           ||||||| ||   |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 147 actcagagatccccctgcctctgcctcccaagtgctgggattaaaggcgtgca-ccacca 89

                                                                       
Query: 300 cacctggctaaaaatgctgttcttataaggcaggctttccatgatctggctccatcacag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  cacctggctaaaaatgctgttcttataaggcaggctttccatgatctggctccatcacag 29

                                       
Query: 360 agccctagccctcaggccaagcccagtg 387
           ||||||||||||||||||||||||||||
Sbjct: 28  agccctagccctcaggccaagcccagtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)